View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_22 (Length: 453)
Name: NF2479_low_22
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 3665697 - 3666081
Alignment:
| Q |
18 |
acatttagatgattacatcgatgtagtttgatctcttctcttttaagtcgtaccaatgagggtggatctagctagcagaagggacc------ccagtatg |
111 |
Q |
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| T |
3665697 |
acatttggatgattacatcgatgtagtttgatctcttatcttt-aactcgtaccaatgagggtggatctagctagcagaagggaccaaactgccagtacg |
3665795 |
T |
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| Q |
112 |
tttataactaatgttcgatcattgaccgagagacatacatggaaactcattaaatgacaaatattttatataacatactgaacgaaaataaaaggatctg |
211 |
Q |
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| T |
3665796 |
tttataaataatgttcgattattgaccgagagacgtacatggaaactaattaaatgacaaatattttatataacatactgaacgaaaataaaaggatctg |
3665895 |
T |
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| Q |
212 |
attcaaacatttaaagaaaatattttccgtttgttatatagagnnnnnnntagtattatttttctgccaaattgtccacaaccaaatagtccatatttac |
311 |
Q |
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| T |
3665896 |
attcaaacattcaaagaaaatattttccgtttgttatataaagaaaaaaatagtattatttttctgccaaattgtcgacatccaaatagtccatgtttac |
3665995 |
T |
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| Q |
312 |
attttggaccattttagtaacggtttagatggtctcaagaaataaaaaatattggcgcattcactgcatgctttcctggagttacta |
398 |
Q |
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| T |
3665996 |
attttgga-ctttttagtaacggtttagatggtctcaagaaataaaagaaattgccgcattcactgcatgctctcctggagttacta |
3666081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 3675300 - 3675389
Alignment:
| Q |
150 |
atggaaactcattaaatgacaaatattttatataacatactgaacgaaaataaaaggatctgattcaaacatttaaagaaaatattttcc |
239 |
Q |
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| T |
3675300 |
atggaaactcattaaatgacaaatatttggtataacataccaaacgaaaattaaaggagttgattcaagcattcaaagaaaatcttttcc |
3675389 |
T |
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