View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_25 (Length: 426)

Name: NF2479_low_25
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_25
NF2479_low_25
[»] chr8 (4 HSPs)
chr8 (1-82)||(21272263-21272344)
chr8 (121-186)||(21272343-21272408)
chr8 (336-409)||(18975080-18975152)
chr8 (336-379)||(14368086-14368129)
[»] chr7 (2 HSPs)
chr7 (336-409)||(5330722-5330794)
chr7 (296-339)||(39615686-39615729)
[»] chr3 (2 HSPs)
chr3 (336-409)||(19806533-19806605)
chr3 (336-379)||(10814640-10814683)
[»] chr5 (2 HSPs)
chr5 (296-332)||(1581247-1581283)
chr5 (296-332)||(1603532-1603568)
[»] chr6 (1 HSPs)
chr6 (336-379)||(19575427-19575470)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 21272263 - 21272344
Alignment:
Q  1 tgttttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272263 tgttttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 21272344  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 21272343 - 21272408
Alignment:
Q  121 tatttcacattcaatataatgggtgtagaaaaaggtcctctttcgtctgtaggtaatgtatataaa 186  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  21272343 tatttcacattcaatatgatgggtgtagaaaaaggtactctttcgtctgtaggtaatgtatataaa 21272408  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 18975080 - 18975152
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 409  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  18975080 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcct 18975152  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 14368086 - 14368129
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatat 379  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  14368086 ctttattagcttgagaaggaacattggacttagattttccatat 14368129  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 5330794 - 5330722
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 409  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  5330794 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcct 5330722  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 39615729 - 39615686
Alignment:
Q  296 agctataaacttgtttatttgtgtctgcatttaactggtacttt 339  Q
    |||||||||||||||||||| | ||||||||||||| |||||||    
T  39615729 agctataaacttgtttatttctttctgcatttaactagtacttt 39615686  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 19806605 - 19806533
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 409  Q
    |||||||| ||| |||||||||||| |||||||||||||||||| || |||  |||||||||||||||| ||||    
T  19806605 ctttattagcttaagaaggaacattggacttagattttccatatatt-cagaatttgctttctttcattagcct 19806533  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 10814683 - 10814640
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatat 379  Q
    |||||||| |||||||||||||||| |||||||| |||||||||    
T  10814683 ctttattagcttgagaaggaacattggacttagactttccatat 10814640  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 1581247 - 1581283
Alignment:
Q  296 agctataaacttgtttatttgtgtctgcatttaactg 332  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1581247 agctataaacttgtttatttgtttctgcatttaactg 1581283  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 1603568 - 1603532
Alignment:
Q  296 agctataaacttgtttatttgtgtctgcatttaactg 332  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1603568 agctataaacttgtttatttgtttctgcatttaactg 1603532  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 19575470 - 19575427
Alignment:
Q  336 ctttattatcttgagaaggaacattcgacttagattttccatat 379  Q
    |||||||| |||||||||||||||| |||||||||||| |||||    
T  19575470 ctttattagcttgagaaggaacattggacttagatttttcatat 19575427  T

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