View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_26 (Length: 419)

Name: NF2479_low_26
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_26
NF2479_low_26
[»] chr8 (9 HSPs)
chr8 (9-419)||(3903562-3903970)
chr8 (9-419)||(3906380-3906807)
chr8 (9-62)||(3888005-3888058)
chr8 (9-89)||(3822129-3822209)
chr8 (9-89)||(3826582-3826662)
chr8 (9-89)||(3829528-3829608)
chr8 (9-89)||(3864263-3864343)
chr8 (9-89)||(3868624-3868704)
chr8 (9-71)||(3876519-3876578)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 3903562 - 3903970
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3903562 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaata 3903661  T
Q  109 ttcttttaaccacggaaaatgtttgataaattatttgatgaattatnnnnnnnttataaaaatttattagaattgatctactaatactaaataaataaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||     
T  3903662 ttcttttaaccacggaaaatgtttgataaattatttgatgaattataaaaaaattataaaaaattattagaattgatctactaatactaaataaataaaa 3903761  T
Q  209 agtttgttaatttaccgtcagataaagtggagtcactctctttttggttattatgtgtgcagaggtacgagcagatatttgtagaaagcgcagtaaaaca 308  Q
    | |  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3903762 aat--gttaatttaccgtcggataaagtggagtcactttctttttggttattatgtgtgcagaggtacaagcagatatttgtagaaagcgcagtaaaaca 3903859  T
Q  309 tggggagatccttgtttttcctctgaaaactgtaatagatattgcatcaaatctgaaaacggagttggcgggatttgcatgtctgatggcattggattta 408  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3903860 tggggagatccttgttttacctctgaaaactgtaatagatattgcatcaaatctgaaaatggagttggcgggatttgcatgtctgatggcattggattta 3903959  T
Q  409 cttgcttctgt 419  Q
    |||||||||||    
T  3903960 cttgcttctgt 3903970  T

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Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 3906380 - 3906807
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaata 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||     
T  3906380 aaattctacatcatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtctatataattaagctttaggtgtgtatagatcaatt 3906479  T
Q  109 ttcttttaaccacggaaaatgtttgataaattatttgatgaattat----------nnnnnnnttataaaaatttattagaattgatctactaatactaa 198  Q
      |||||||||||||||||||||||| |||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  3906480 accttttaaccacggaaaatgtttgagaaattatttgatgaattataaaaataaaataaaaaattataaaaatttattagaattgatctactaatactaa 3906579  T
Q  199 ataaataaatagtttgttaatttaccgtcagataaagtggag-tcactctctttttggttattatgtgtgcagaggtacgagcagatatttg------ta 291  Q
    ||||||||| |   |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||      |     
T  3906580 ataaataaaaa--atgttaatttaccgtcagataaagtggagttcactatcttttttgttattatgtgtgcagaggtatgagcagatctttgtcgaactt 3906677  T
Q  292 gaaagcgcagtaaaacatggggagatccttgtttttcctctgaaaactg--taatagatattgcatcaaatctgaaaacggagttggcgggatttgcatg 389  Q
    ||| ||||  || |||||||||| ||| ||||||    ||||||  |||  ||||||||||||||||   |||||| |||||||||| |||| |||||||    
T  3906678 gaaggcgcgatacaacatggggaaatctttgtttggattctgaagtctgtataatagatattgcatcggctctgaacacggagttggtgggacttgcatg 3906777  T
Q  390 tctgatggcattggatttacttgcttctgt 419  Q
     |||||||| |||||||| |||||||||||    
T  3906778 cctgatggccttggatttgcttgcttctgt 3906807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 3888005 - 3888058
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccaca 62  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  3888005 aaattctacaccatctttctgttcctcagctttgctctcctccttttctccaca 3888058  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3822129 - 3822209
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat 89  Q
    |||||||||||||||||||| || || ||| |||| ||||||||||| || |||| ||||||| || ||| ||||||||||    
T  3822129 aaattctacaccatctttctttttctgagctttgcactcctccttttctcaacattgggtacgattttatgattaagctat 3822209  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3826582 - 3826662
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat 89  Q
    ||||||||| |||||||||| || || ||| |||| ||||||||||| ||||||| ||||||| || ||| ||||||||||    
T  3826582 aaattctacgccatctttctatttctgagctttgcactcctccttttctccacattgggtacgattttatgattaagctat 3826662  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3829528 - 3829608
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat 89  Q
    |||||||||||||||||||| || || ||| |||| ||||||||||| ||||||| ||||| |  ||||| ||||||||||    
T  3829528 aaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaagactatatgattaagctat 3829608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3864263 - 3864343
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat 89  Q
    ||||||||| |||||||||| || || ||| |||| ||||||||||| ||||||| ||||| | || ||| ||||||||||    
T  3864263 aaattctacgccatctttctttttctgagctttgcactcctccttttctccacattgggtatgattttatgattaagctat 3864343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3868624 - 3868704
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat 89  Q
    |||||||||||||||||||| || || ||| |||| ||| ||||||| ||||||| ||||| |  ||||| ||||||||||    
T  3868624 aaattctacaccatctttctttttcttagctttgcactcatccttttctccacattgggtaagactatatgattaagctat 3868704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 3876519 - 3876578
Alignment:
Q  9 aaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacg 71  Q
    ||||||||| ||||||||||||| |||||| ||||    ||||||||||||||||||||||||    
T  3876519 aaattctacgccatctttctgtttctcagcattgc---actccttttttccacatggggtacg 3876578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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