View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_27 (Length: 415)
Name: NF2479_low_27
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 24791672 - 24791270
Alignment:
| Q |
1 |
ggaagtggcggatttggcacagtataccgagttgaggtcgatggtttaggctatgttgctgtgaaaaagataaggagtaacaaaaagttagatgataaac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24791672 |
ggaagtggcggatttggcacggtataccgagttgaagtcaatggtttaggcaatgttgctgtgaaaaagataaggagtaacaaaaagttagatgataaac |
24791573 |
T |
|
| Q |
101 |
tcgagagttcgtttcgcgcagaagttaaaatactgagcaatattcgtcataataacattgtgaaattattgtgttgtatctctaatgatgattctatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24791572 |
tcgagagttcgtttcgcgcagaagttaaaatactgagcaatattcgtcataacaacattgtgaaattattgtgttgtatctctaatgatgattctatgct |
24791473 |
T |
|
| Q |
201 |
tcttgtctatgagtatcttgnnnnnnnnngtctagataagtggctgcacatgaagagtaagtcgtcgtcatcaactttgtcaggcttagtacaaaaacag |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24791472 |
tcttgtctatgagtatcttgaaaaaaaaagtctagataagtggctgcacatgaagagtaagtcgtcgtcatcaactttgtcaggcttagtacaaaaacag |
24791373 |
T |
|
| Q |
301 |
gtggttcttgattggccaaagagattgaaaatagctattggtactgctgaaggtttgagctacatgcatcatgattgttcaccacctattgtacatagtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24791372 |
gtggttcttgattggccaaagagattgaaaatagctattggtactgctcaaggtttgagctacatgcatcatgattgttcaccacctattgtacatagag |
24791273 |
T |
|
| Q |
401 |
atg |
403 |
Q |
| |
|
||| |
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|
| T |
24791272 |
atg |
24791270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 33885621 - 33885836
Alignment:
| Q |
1 |
ggaagtggcggatttggcacagtataccgagttgaggtcgatggtttaggctatgttgctgtgaaaaagataaggagtaacaaaaagttagatgataaac |
100 |
Q |
| |
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|||||||| |||||||| || |||||||| ||| ||||| |||||| |||||||||||||||||| || | |||||||||||| | | | | | |
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| T |
33885621 |
ggaagtggtggatttggaacggtataccgcgttccagtcgacggtttaacctatgttgctgtgaaaaaaatcaagagtaacaaaaattcaaggcaacagc |
33885720 |
T |
|
| Q |
101 |
tcgagagttcgtttcgcgcagaagttaaaatactgagcaatattcgtcataataacattgtgaaattattgtgttgtatctctaatgatgattctatgct |
200 |
Q |
| |
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|||| ||||||||| || |||||||||||| ||||||||||||| ||| ||||||||||| || || ||||||||||||||||| ||||||||| | |
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| T |
33885721 |
tcgaagcttcgtttcgggcggaagttaaaatattgagcaatattcgacatcgaaacattgtgaagttgttatgttgtatctctaatgaggattctatgat |
33885820 |
T |
|
| Q |
201 |
tcttgtctatgagtat |
216 |
Q |
| |
|
||||| ||||||||| |
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| T |
33885821 |
gcttgtatatgagtat |
33885836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 33895527 - 33895419
Alignment:
| Q |
108 |
ttcgtttcgcgcagaagttaaaatactgagcaatattcgtcataataacattgtgaaattattgtgttgtatctctaatgatgattctatgcttcttgtc |
207 |
Q |
| |
|
||||||||| || ||||||| |||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||| ||||||||| | ||||| |
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| T |
33895527 |
ttcgtttcgggccgaagttagaatattgagcaatattcgacatagaaacattgtgaagttgttgtgttgtatctctaatgaggattctatgatgcttgtg |
33895428 |
T |
|
| Q |
208 |
tatgagtat |
216 |
Q |
| |
|
||||||||| |
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|
| T |
33895427 |
tatgagtat |
33895419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 33916755 - 33916930
Alignment:
| Q |
45 |
tttaggctatgttgctgtgaaaaagataagg---agtaacaaaaagttagatgataaactcgagagttcgtttcgcgcagaagttaaaatactgagcaat |
141 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||| |||| |||||||||||| | || || | | ||| |||| ||||||||| |||||||||||||| |
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| T |
33916755 |
tttaggctatgttgcagtgaagaagattaggggaagtagcaaaaagttagaccagaagcttgtggattcatttcttgcagaagttgaaatactgagcaat |
33916854 |
T |
|
| Q |
142 |
attcgtcataataacattgtgaaattattgtgttgtatctctaatgatgattctatgcttcttgtctatgagtatc |
217 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||| | |||||||||| | || ||||| || ||||||| |
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| T |
33916855 |
attcggcatagcaacattgtgaagttgatgtgttgtatctcaagtgatgattctctactacttgtatacgagtatc |
33916930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 33909993 - 33910085
Alignment:
| Q |
124 |
gttaaaatactgagcaatattcgtcataataacattgtgaaattattgtgttgtatctctaatgatgattctatgcttcttgtctatgagtat |
216 |
Q |
| |
|
||||||||| |||||| ||||| |||| |||||||||||||| || ||||||||||||||||||||| | ||||| ||||| || |||||| |
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| T |
33909993 |
gttaaaatattgagcagcattcgacatagaaacattgtgaaattgttatgttgtatctctaatgatgatacaatgctacttgtttacgagtat |
33910085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 33910173 - 33910252
Alignment:
| Q |
304 |
gttcttgattggccaaagagattgaaaatagctattggtactgctgaaggtttgagctacatgcatcatgattgttcacc |
383 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| | ||| ||| ||||||||||||| ||||||||||| |||||||| |
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|
| T |
33910173 |
gttcttgactggccaaagagattgcaaatagctgtcggtgtagctcaaggtttgagctatatgcatcatgaatgttcacc |
33910252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 33917011 - 33917096
Alignment:
| Q |
307 |
cttgattggccaaagagattgaaaatagctattggtactgctgaaggtttgagctacatgcatcatgattgttcaccacctattgt |
392 |
Q |
| |
|
|||||||||||||||||| || | ||||| ||||| |||| |||||||| ||||||||||| |||| || ||||| |||||||| |
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| T |
33917011 |
cttgattggccaaagagactgcatatagccattggagctgcacaaggtttgtgctacatgcataatgactgctcaccgcctattgt |
33917096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 33885921 - 33885988
Alignment:
| Q |
310 |
gattggccaaagagattgaaaatagctattggtactgctgaaggtttgagctacatgcatcatgattg |
377 |
Q |
| |
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|||||||||||| ||||| |||||||| ||||| |||| | |||||| |||||||||| |||||||| |
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| T |
33885921 |
gattggccaaagcgattgcgaatagctactggtattgctcatggtttgtgctacatgcaccatgattg |
33885988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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