View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_34 (Length: 403)
Name: NF2479_low_34
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 7431611 - 7431994
Alignment:
| Q |
6 |
tgaatacaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcgggggaaataatatcatttt |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
7431611 |
tgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacatttt |
7431710 |
T |
|
| Q |
106 |
cactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431711 |
cactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttga |
7431810 |
T |
|
| Q |
206 |
attgaagagtttatgcagaaaaacatgtaattcttcttttcttatgtactcataagactcaagactttttacactaaacaattccctttgaaacatttta |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431811 |
attgaagagtttatgcagaaaaatatgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacatttta |
7431910 |
T |
|
| Q |
306 |
cgggcttgttgataatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttccgcaggcaaatttg |
389 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431911 |
cgggcttgttgaaaatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttccgcaggcaaatttg |
7431994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 7425621 - 7425992
Alignment:
| Q |
5 |
atgaatacaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcgggggaaataatatcattt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
7425621 |
atgaatccaaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattt |
7425720 |
T |
|
| Q |
105 |
tcactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttg |
204 |
Q |
| |
|
|||||||||||||| || || || ||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
7425721 |
tcactcttctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttg |
7425820 |
T |
|
| Q |
205 |
aattgaagagtttatgcagaaaaacatgtaattcttcttttcttatgtactcataagactcaagactttttacactaaacaattccctttgaaacatttt |
304 |
Q |
| |
|
|||| || |||| |||| ||| ||||||| |||| |||||| |||||||||||||||||||| | |||||||||||||| ||| || ||||||| |
|
|
| T |
7425821 |
aattaaatagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacatttt |
7425920 |
T |
|
| Q |
305 |
acgggcttgttgataatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttcc |
376 |
Q |
| |
|
||| |||||||| ||||||| || ||| || |||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
7425921 |
acgagcttgttgccaatatgggccatattgggaccaagtaatgttggagtagttataagtagtatattttcc |
7425992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 7416635 - 7417006
Alignment:
| Q |
5 |
atgaatacaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcgggggaaataatatcattt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||| || |||||||||| |||| |
|
|
| T |
7416635 |
atgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcatta |
7416734 |
T |
|
| Q |
105 |
tcactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttg |
204 |
Q |
| |
|
||| |||| |||||||| || ||||| | |||||| || ||||||| ||| ||||| ||||||||||||||||| |||| |||||| ||||| ||||||| |
|
|
| T |
7416735 |
tcagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttg |
7416834 |
T |
|
| Q |
205 |
aattgaagagtttatgcagaaaaacatgtaattcttcttttcttatgtactcataagactcaagactttttacactaaacaattccctttgaaacatttt |
304 |
Q |
| |
|
||||||| |||||||||| |||| |||| | |||| ||||||||||||||| |||||||| || | |||| |||||||||| ||| | || ||||| | |
|
|
| T |
7416835 |
aattgaaaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattct |
7416934 |
T |
|
| Q |
305 |
acgggcttgttgataatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttcc |
376 |
Q |
| |
|
||| ||||| | |||||||||| ||| | |||||| |||| || |||||||| |||||||||||||| |
|
|
| T |
7416935 |
acgagcttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttcc |
7417006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 7430041 - 7429973
Alignment:
| Q |
133 |
acaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttatttt |
201 |
Q |
| |
|
|||||||||| || |||||||| | |||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
7430041 |
acaccatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University