View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_35 (Length: 401)
Name: NF2479_low_35
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 33289085 - 33289467
Alignment:
| Q |
19 |
attgagggataataaacctagttttgacatctaatcaaaactatctaacatatctatctaaatgagcatatgcacttacattagatccatccctcgttaa |
118 |
Q |
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| T |
33289085 |
attgagggataataaacctagttttgacatctaatcaaaactatctaacatatctatctaaatgagcatatgcacttacattagattcatccctgattaa |
33289184 |
T |
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| Q |
119 |
gtctaaaggatggaaatacatcacaaaccctccctctctccttattagagttctcaaagctaaatatttttcgtggttttttggaggctgccttggttac |
218 |
Q |
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| T |
33289185 |
gtctaaaggatggaaatacatcacaaactctccctctctccttatcagagttctcaaagctaaatatttttcgtgattttttggaggctgccttggttac |
33289284 |
T |
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| Q |
219 |
aatcctacctacacacagggaggggagtatttggagtagcatctcattgttattccttggatatatgtggaaaattggtaattaaatgacatcaaagttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33289285 |
aatcctacctacacacagggaggggagtatttggagtagcatctcattgttattccttggatatatgtggaaaattggtaattaaatgacatcaaaattt |
33289384 |
T |
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| Q |
319 |
atttagacacttggatctaatcgagacaaacttcaatgcatactacttcgattcctcgtagtctttcagatctgatactagct |
401 |
Q |
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| T |
33289385 |
attcagacacttggatctaatcgagacaaacttcaatgcatactacttcgattcctcatagtctttcagatctgatactagct |
33289467 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 32886330 - 32886266
Alignment:
| Q |
124 |
aaggatggaaatacatcacaaaccctccctctctccttattagagttctcaaagctaaatatttt |
188 |
Q |
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|||||||||| | |||||||||| || |||||||||| | | |||||||||||||||||||||| |
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| T |
32886330 |
aaggatggaagttcatcacaaactcttcctctctcctcaccaaagttctcaaagctaaatatttt |
32886266 |
T |
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