View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_38 (Length: 392)
Name: NF2479_low_38
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 99 - 314
Target Start/End: Complemental strand, 35233707 - 35233492
Alignment:
| Q |
99 |
agatttcatcgtttatgtgaaatacatttcttaagcgtcaacccacacgacttccacctagctagagagtgaatgttagagattgtgtgaacaagaagtt |
198 |
Q |
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| T |
35233707 |
agatttcatcgtttatgtgaaatatatttcttaagtgtgaacccacacgacttccacctagttagagagtgaatgttagagattgtgtgaacaagaagtt |
35233608 |
T |
|
| Q |
199 |
gatatgaccgaaaagaattatctcttgttgattttggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
298 |
Q |
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| T |
35233607 |
gatatgatggaaaaggattatctcctgttgatttcggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
35233508 |
T |
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| Q |
299 |
aaccattttacgataa |
314 |
Q |
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|||||||||||||||| |
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| T |
35233507 |
aaccattttacgataa |
35233492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35233820 - 35233751
Alignment:
| Q |
1 |
aaaaacaactcttatcttttcttttacttttgtgtctaatcatcaaatttcaatcaataaaaaatgttag |
70 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35233820 |
aaaaacaactcttatcttttcttttactttggtgtctaatcatcaaatttcaatcaataaaaaatgttag |
35233751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 16829729 - 16829701
Alignment:
| Q |
279 |
aagaaaaatgatatttgcacaaccatttt |
307 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16829729 |
aagaaaaatgatatttgcacaaccatttt |
16829701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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