View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_40 (Length: 377)
Name: NF2479_low_40
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 39 - 366
Target Start/End: Original strand, 23338502 - 23338829
Alignment:
| Q |
39 |
caaatgcatgtttgatattaagatagattaacaagaatcataacgagtcacgataattttacaaaatcatagaatgtacttattgataatgaaactagca |
138 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
23338502 |
caaatgcatgtttgatattaagatagattaacgagaatcataacgagtcacgataattttacaaaatcatagaatgtaatcattgataatgaaactagca |
23338601 |
T |
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| Q |
139 |
caacttaactaacccaatgttggctaatgtaaagtccacatcaccaccctataaacaatcttatagtcggtttggtcctaaagctaaatgaaggtcccac |
238 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23338602 |
caacttaactaaaccaatgttggctaatgtaaagtccacatcaccaccctataaacaatcttatagtcggtttgatcctaaagctaaatgaaggtcccac |
23338701 |
T |
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| Q |
239 |
tctcaagaattagtcatcagtcggtgatccagccccaaaacatcacatcaaccgtacacgtgtcatcacaggaaaaaataggaggctccctacccacnnn |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23338702 |
tctcaagaattagtcatcagtcggtgatccagccccaaaacatcacatcaaccgtacacgtgtcatcacaggaaaaaataggaggctccctacccacttt |
23338801 |
T |
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| Q |
339 |
nnnngaaaatttgtttttcttctttcat |
366 |
Q |
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|||||||||||||||||||||||| |
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| T |
23338802 |
ttttgaaaatttgtttttcttctttcat |
23338829 |
T |
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