View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_41 (Length: 374)

Name: NF2479_low_41
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_41
NF2479_low_41
[»] chr5 (5 HSPs)
chr5 (51-178)||(36320708-36320837)
chr5 (256-357)||(36320510-36320607)
chr5 (9-55)||(36320942-36320988)
chr5 (324-357)||(36326940-36326973)
chr5 (302-350)||(36304639-36304687)
[»] chr8 (1 HSPs)
chr8 (180-301)||(1890744-1890860)
[»] chr6 (2 HSPs)
chr6 (183-300)||(32133885-32133997)
chr6 (183-231)||(22693775-22693823)
[»] chr2 (1 HSPs)
chr2 (208-301)||(32691872-32691960)
[»] chr4 (1 HSPs)
chr4 (253-302)||(56557663-56557712)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 36320837 - 36320708
Alignment:
Q  51 aaaacaattaaatggttgtgtttattgaactggtgtgcaagagaatttctaaaaaccgtggatgaagatgaagggaaagattttggtaagcag--taagc 148  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||    
T  36320837 aaaacaattaaatggttgtgtttattgaactggtgtgctagagaatttctaaaaactgtggatgaagatgaagggaaagattttggtaagcagtataagc 36320738  T
Q  149 accgtgcgaagagacggaaaagttagtggg 178  Q
    ||||||  ||||||||||||||||||||||    
T  36320737 accgtgaaaagagacggaaaagttagtggg 36320708  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 36320607 - 36320510
Alignment:
Q  256 aatgttttttaataaaacctcaagggaggtaagtgcaatttgctctatattttaatttatatatatccaattaatggcatgatattaatgtaatggcatc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    |||||||| |||||||||||||||||||||||||||||    
T  36320607 aatgttttttaataaaacctcaagggaggtaagtgcaatttgctctatatgttaattt----atatccaagtaatggcatgatattaatgtaatggcatc 36320512  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 36320988 - 36320942
Alignment:
Q  9 gaagaatatcacaacaagaaaataaatgaaatatgaagtttcaaaac 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36320988 gaagaatatcacaacaagaaaataaatgaaatatgaagtttcaaaac 36320942  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 36326973 - 36326940
Alignment:
Q  324 aattaatggcatgatattaatgtaatggcatctg 357  Q
    ||||||||||||||||||||||||||||||||||    
T  36326973 aattaatggcatgatattaatgtaatggcatctg 36326940  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 36304687 - 36304639
Alignment:
Q  302 atattttaatttatatatatccaattaatggcatgatattaatgtaatg 350  Q
    |||||||||||||||| ||   |||||||||||||||||||||||||||    
T  36304687 atattttaatttatatctaagtaattaatggcatgatattaatgtaatg 36304639  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 1890860 - 1890744
Alignment:
Q  180 aaaggggaaagtgcctcacttatgaaaaaattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaag 279  Q
    |||| ||||||| ||||| | || ||| |||||||||| || ||| |||||  |||||||||| |||||||     | ||| |||||||||||||| |||    
T  1890860 aaagaggaaagtacctcaatcataaaataattaagggatgttaatgtttttctcaaactagagagggtgtg-----agtgtcttttaataaaacctgaag 1890766  T
Q  280 ggaggtaagtgcaatttgctct 301  Q
    |||||| |||||||||||||||    
T  1890765 ggaggtgagtgcaatttgctct 1890744  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 32133885 - 32133997
Alignment:
Q  183 ggggaaagtgcctcacttatgaaaaaattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaaggga 282  Q
    |||||||||||| || | |||| | ||||||||||||| ||| ||||||| |||||||||||     |  |||||||| |||||||||||| ||| ||||    
T  32133885 ggggaaagtgccacaatcatgatataattaagggaggttaatgttttttctaaactagaggg-----gaagtgaatgtcttttaataaaacttcagggga 32133979  T
Q  283 ggtaagtgcaatttgctc 300  Q
    ||| ||| ||||||||||    
T  32133980 ggtgagtacaatttgctc 32133997  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 22693823 - 22693775
Alignment:
Q  183 ggggaaagtgcctcacttatgaaaaaattaagggaggtcaatatttttt 231  Q
    ||||||||||||||||| |||||  ||||||||||||| ||| ||||||    
T  22693823 ggggaaagtgcctcactcatgaagtaattaagggaggtgaatgtttttt 22693775  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 32691872 - 32691960
Alignment:
Q  208 aattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaagggaggtaagtgcaatttgctct 301  Q
    ||||||||||||| ||| ||||||||||| || |||||||     ||||||||||||||||||||  | | ||||| | |||||||||||||||    
T  32691872 aattaagggaggtgaatgttttttccaaattaaagggggt-----gtgaatgttttttaataaaattttaggggagctgagtgcaatttgctct 32691960  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 56557712 - 56557663
Alignment:
Q  253 gtgaatgttttttaataaaacctcaagggaggtaagtgcaatttgctcta 302  Q
    |||||||| |||||| ||||||| | ||||||| ||||||||||||||||    
T  56557712 gtgaatgtcttttaaaaaaaccttaggggaggtgagtgcaatttgctcta 56557663  T

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