View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_42 (Length: 365)
Name: NF2479_low_42
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 13278429 - 13278775
Alignment:
| Q |
1 |
tagggaagcaattgcttaatagaaaaactactacagccactgtcttgtcggatacataagaacgattggctgattttcacgatcaatcattttgttttta |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13278429 |
taggtaagaaattgcttaatagaaaaactactacagccactgtcttgtcggatacataagaacgattggctgatttgcacgatcaatcattttgttttta |
13278528 |
T |
|
| Q |
101 |
tgttcgctacttatcggttttctttcaatccgaatttaattatgaaatagtccaaaagatgaaaaatataagaataatgcacctgcattcgagtcacgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13278529 |
tgttcgctacttatcggttttctttcaatccgaatttaattataaaatagtccaaaagatgaaaaatataagaataatgcacctgcattcgagtcacgag |
13278628 |
T |
|
| Q |
201 |
aacccatattggatttgtgaacaaaacattcaatgacctgcataataagattataagaatacgaatgaaatacaaggaattcaggttcacagtaacatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13278629 |
aacccatattggatttgtgaacaaaacattcaatgacctgcataataagattataagaatacgaatgaaatacaaggaattcaggttcacagtaacatat |
13278728 |
T |
|
| Q |
301 |
agaatgtaacacttcaaaggaaatagacatgttaatcacccggcaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13278729 |
agaatgtaacacttcaaaggaaatagacatgttaatcacccggcaat |
13278775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University