View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_44 (Length: 362)
Name: NF2479_low_44
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 55336955 - 55336630
Alignment:
| Q |
22 |
atccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacag |
121 |
Q |
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| T |
55336955 |
atccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatcggcgaacag |
55336856 |
T |
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| Q |
122 |
cgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtg |
221 |
Q |
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| T |
55336855 |
cgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaacttgtattgcagccgcaactggtgctgatggtg |
55336756 |
T |
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| Q |
222 |
cacaactgttggctctgaaactatcatccactcttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctga |
321 |
Q |
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| T |
55336755 |
cacaactgttggctctgaaactatcatccactcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgcagctcgctga |
55336656 |
T |
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| Q |
322 |
ggaacagcgcagtgctacaagattgt |
347 |
Q |
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| T |
55336655 |
ggaacagcgcaatgctacaagattgt |
55336630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 55331485 - 55331212
Alignment:
| Q |
54 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattggaacaacctacttctaaacaa |
153 |
Q |
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| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattggaacaacctacttctaaacaa |
55331386 |
T |
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| Q |
154 |
cattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcatccact |
253 |
Q |
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| T |
55331385 |
catcaacatgatcacacttactgctacaacattaaccggtgttgtggctgcaagtggtgctattggcaccccacttttggctcttaaactatcatccaca |
55331286 |
T |
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| Q |
254 |
cttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaaca |
327 |
Q |
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| T |
55331285 |
cttttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgcaactcgcggaagaaca |
55331212 |
T |
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