View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_47 (Length: 359)
Name: NF2479_low_47
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 8493481 - 8493824
Alignment:
| Q |
16 |
cagatgtagtgttacagttcaagaaagtttgtgaatgatttaaaaaatatctgaattatgttgaaagtacaatattggaacctttgaaggaaaaaatagt |
115 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
8493481 |
cagaagtagtgttatagttcaaaaaagtttgtgaatgatttaaaaaatatctgaattatgttgaaagtacaatattggaacttgtgaaggaaaaaatagt |
8493580 |
T |
|
| Q |
116 |
taatgc--------------------attttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatg |
195 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493581 |
taatgcgtggaccaaccatgttattcattttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatg |
8493680 |
T |
|
| Q |
196 |
cgtgatttggaaaaaggatggaaaacaataaatgtcatgttaacaatacaattcactgagatacaagccacttttggaagaaactctacagttttggaac |
295 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
8493681 |
catgatttggaaaaaggatggaaagtaataaatgtcatgttaacaatacaattcattgagatacaagccacttttggaagaaacactactgttttggaac |
8493780 |
T |
|
| Q |
296 |
ataaatttaaaggtaataaaatgtacaagagtttggagtataat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493781 |
ataaatttaaaggtaataaaatgtacaagagtttggagtataat |
8493824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 19806226 - 19806569
Alignment:
| Q |
16 |
cagatgtagtgttacagttcaagaaagtttgtgaatgatttaaaaaatatctgaattatgttgaaagtacaatattggaacctttgaaggaaaaaatagt |
115 |
Q |
| |
|
|||||| |||| |||| |||| || ||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19806226 |
cagatgcagtgctacaattcagaaaggtttgtgaacaatttccaaaatttctgaagtatgttgaaagtacaatattggaacctttgaagaaaaaaatagt |
19806325 |
T |
|
| Q |
116 |
taa--------------------tgcattttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatg |
195 |
Q |
| |
|
||| |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
19806326 |
taaagcgtggaccaaccgtgttatgcattttggttgcacaacaactaacggggttgaatccgctcatggtacattgaaaggatatttggaggatagtaag |
19806425 |
T |
|
| Q |
196 |
cgtgatttggaaaaaggatggaaaacaataaatgtcatgttaacaatacaattcactgagatacaagccacttttggaagaaactctacagttttggaac |
295 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
19806426 |
ggtgatttggcaaaaggatggaaagcaataaatgccatgttaacagtacagttcactgaaatacaagccacttttggaagaaattctactgttctggaac |
19806525 |
T |
|
| Q |
296 |
ataaatttaaaggtaataaaatgtacaagagtttggagtataat |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19806526 |
ataaatttaaaggcaataaaatgtacaagagtttggagtataat |
19806569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 42 - 339
Target Start/End: Original strand, 22519368 - 22519685
Alignment:
| Q |
42 |
gtttgtgaatgatttaaaaaatatctgaattatgttgaaagtacaatattggaacctttgaaggaaaaaatagttaatg--------------------c |
121 |
Q |
| |
|
||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
22519368 |
gtttgtgaacaatttccaaaatttctgaagtatgttgaaagtacaatattggaacctttgaagaaaaaaatagttaaagtgtggaccaactgtgttattc |
22519467 |
T |
|
| Q |
122 |
attttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatgcgtgatttggaaaaaggatggaaaac |
221 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||| | |
|
|
| T |
22519468 |
attttggttgcacaacaactaacagggttgaatccgctcatggtacattgaaaggatatttggaggatagtaagggtgatttggaaaaaggatggaaagc |
22519567 |
T |
|
| Q |
222 |
aataaatgtcatgttaacaatacaattcactgagatacaagccacttttggaagaaactctacagttttggaacataaatttaaaggtaataaaatgtac |
321 |
Q |
| |
|
|||||||| |||||| | | |||| |||||||| ||||||||||||||||||||||| ||||| ||| || ||||||||||||| || |||||||||||| |
|
|
| T |
22519568 |
aataaatgccatgttcaaagtacagttcactgaaatacaagccacttttggaagaaattctactgttctgaaacataaatttaatggcaataaaatgtac |
22519667 |
T |
|
| Q |
322 |
aagagtttggagtataat |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22519668 |
aagagtttggagtataat |
22519685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 1196743 - 1197086
Alignment:
| Q |
16 |
cagatgtagtgttacagttcaagaaagtttgtgaatgatttaaaaaatatctgaattatgttgaaagtacaatattggaacctttgaaggaaaaaatagt |
115 |
Q |
| |
|
|||||| |||| |||| |||| || ||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1196743 |
cagatgcagtgctacaattcagaaaggtttgtgaacaatttccaaaatttctgaagtatgttgaaagtacaatattggaacctttgaagaaaaaaatagt |
1196842 |
T |
|
| Q |
116 |
taa--------------------tgcattttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatg |
195 |
Q |
| |
|
||| |||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
1196843 |
taaagcgtggaccaaccgtgttatgcattttggttgcacaacaactaacagggttgaatccgctcatggtacattgaaaggatatttggaggatagtaag |
1196942 |
T |
|
| Q |
196 |
cgtgatttggaaaaaggatggaaaacaataaatgtcatgttaacaatacaattcactgagatacaagccacttttggaagaaactctacagttttggaac |
295 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||| |||| |||| ||| ||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
1196943 |
ggtgatttggcaaaaggatggaaagcaataaatgccatgttaacagtacagttcattgaaatacaagccacttttggaagaaattctactgttctggaac |
1197042 |
T |
|
| Q |
296 |
ataaatttaaaggtaataaaatgtacaagagtttggagtataat |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1197043 |
ataaatttaaaggcaataaaatgtacaagagtttggagtataat |
1197086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 118 - 339
Target Start/End: Complemental strand, 25214345 - 25214124
Alignment:
| Q |
118 |
atgcattttggttgcacaacaacaaacaatgttgaatccactcatggtgcattgaaaggatatttgctagatagtatgcgtgatttggaaaaaggatgga |
217 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||| |||| || | ||||||||| ||||||||||| |
|
|
| T |
25214345 |
atgcattttggttgcacaacaactaacagggttgaatccattcatggtacattgaaaggatatttgcaggataataagggtgatttggcaaaaggatgga |
25214246 |
T |
|
| Q |
218 |
aaacaataaatgtcatgttaacaatacaattcactgagatacaagccacttttggaagaaactctacagttttggaacataaatttaaaggtaataaaat |
317 |
Q |
| |
|
|| ||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
25214245 |
aagcaataaatgccatgttaacaatatagttcactgaaatacaagccacttttggaagaaattctactgttttggaacataaatttaacggcaataaaat |
25214146 |
T |
|
| Q |
318 |
gtacaagagtttggagtataat |
339 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
25214145 |
gtacaagagcttggaatataat |
25214124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 25214415 - 25214365
Alignment:
| Q |
67 |
tgaattatgttgaaagtacaatattggaacctttgaaggaaaaaatagttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25214415 |
tgaattatgttgaaagtacaatattggaacctttgaagga-aaaatagttaa |
25214365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University