View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_5 (Length: 631)
Name: NF2479_low_5
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 226 - 619
Target Start/End: Complemental strand, 41639102 - 41638714
Alignment:
| Q |
226 |
ataaaaagtagactctaatgcatatgagcatatactttggttggtttggttactaattgtgcaaaacactaacaggagctaaggtgtcactaacatgtat |
325 |
Q |
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| T |
41639102 |
ataacaagtagactctaatgcatatgagcatatactttggttggtt-----actaattgtgcaaaacactaacaggagctaaggtgtcactaacatgtat |
41639008 |
T |
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| Q |
326 |
ggacaagagaaacagggttatgtattatacaagtgacacaacagatgagttaggactatacgacattacagtggacaaatacaaatacggcaaaaagttg |
425 |
Q |
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| T |
41639007 |
ggacaagagaaacagggttatgtattatacaagtgacacaacagatgagttaggactatacgacattacagtggacaaatacaaatacggcaaaaagttg |
41638908 |
T |
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| Q |
426 |
gatacaaaaggttgctatgtgaggttagtgtcatctcctgataatgtttgcaacattctcactgactttggtggtggaaaggctggttacaaactcaact |
525 |
Q |
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| T |
41638907 |
gatacaaaaggttgctatgtgaggttagtgtcatctcctgataatgtttgcaacattctcactgactttggtggtggaaaagctggttacaaactcaact |
41638808 |
T |
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| Q |
526 |
acccaacatcagtgtatcgtggtttgattaaatatatggttacccctttttattataccactcctatgtgtgagatgcctgatactgataccta |
619 |
Q |
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| T |
41638807 |
acccaacatcagtgtatcgtggtttgattaaatatatggttacccctttttattataccactcctatgtgtgagatgcctgatactgataccta |
41638714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 41639364 - 41639151
Alignment:
| Q |
19 |
gcaatagcattgatgatcactgcaatggtagtctgttgcaccaccaatagcatactagtctcagcttgggaagaaccagcacaagtcattcacgtggttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41639364 |
gcaatagcattgatgatcactgcaatggtagtctgttgcaccaccaatagcatactagtctcagcttgggaagaaccagcacaagtcattcacgtggttg |
41639265 |
T |
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| Q |
119 |
gaaaagtgttgtgccaggattgtagcaagggatggaacgaatgggtttctggtgataagccaattaaaggtatgtgatattatcattttgttacatttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41639264 |
gaaaagtgttgtgccaggattgtagcaagggatggaacgaatgggtttctggtgataagccaattaaaggtatgtgatattatcattttgttacatttaa |
41639165 |
T |
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| Q |
219 |
aaataaaataaaaa |
232 |
Q |
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|||||||||||||| |
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| T |
41639164 |
aaataaaataaaaa |
41639151 |
T |
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