View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_50 (Length: 355)
Name: NF2479_low_50
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 34431344 - 34431016
Alignment:
| Q |
11 |
cacagacactaacacaggacatgacactgacacgttaacatcgataataattttaaaaaattacaaatgcatatacaaaaagaatttaatcgcatgtgtt |
110 |
Q |
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| T |
34431344 |
cacagacactaacacaggacatgacactgacacgttaacatcgataataattttaaaaaatgacatatgcatatacaaaaagaatttaatcgcatgtgtt |
34431245 |
T |
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| Q |
111 |
aatgtgtgtcggtgtcagacactgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttttgt |
210 |
Q |
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| T |
34431244 |
aatgtgtgtcggtgtcagacaccgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttttgt |
34431145 |
T |
|
| Q |
211 |
tatttcatcatcaacatttgtaaattttgttattattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacattttgag |
310 |
Q |
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| T |
34431144 |
tatttcatcatcaacatttgtaaattttgttattattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacatcttgag |
34431045 |
T |
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| Q |
311 |
cttatagtggatagattgtagcttgtaag |
339 |
Q |
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| T |
34431044 |
cttatagtggatagattgtagcttgtaag |
34431016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 34431596 - 34431524
Alignment:
| Q |
243 |
ttattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacattttgagcttat |
315 |
Q |
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| T |
34431596 |
ttattagttattagattaatattgtttttgtttagttagggtcctgtttggtgaggttaaatttggagcttat |
34431524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 29519175 - 29519219
Alignment:
| Q |
27 |
ggacatgacactgacacgttaacatcgataataattttaaaaaat |
71 |
Q |
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| T |
29519175 |
ggacatgacactgacacgtcaacaccgataataattttaaaaaat |
29519219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 15454224 - 15454260
Alignment:
| Q |
35 |
cactgacacgttaacatcgataataattttaaaaaat |
71 |
Q |
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| T |
15454224 |
cactgacacgtcaacgtcgataataattttaaaaaat |
15454260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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