View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_52 (Length: 346)
Name: NF2479_low_52
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 56436879 - 56436555
Alignment:
| Q |
18 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttc |
117 |
Q |
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| T |
56436879 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttc |
56436780 |
T |
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| Q |
118 |
acaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcatcggagctgacgtcaacattgaggaagagatgat |
217 |
Q |
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| T |
56436779 |
acaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaacattgaggaagagatgat |
56436680 |
T |
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| Q |
218 |
tatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagc |
317 |
Q |
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| T |
56436679 |
tatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagc |
56436580 |
T |
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| Q |
318 |
aagagccctaccaattcctttgcta |
342 |
Q |
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| T |
56436579 |
aagagccctaccaattcctttgcta |
56436555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 26560731 - 26560811
Alignment:
| Q |
18 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
98 |
Q |
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| T |
26560731 |
attggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgtt |
26560811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24890190 - 24890270
Alignment:
| Q |
18 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
98 |
Q |
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| T |
24890190 |
attggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgttcttgtt |
24890270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 26562873 - 26562803
Alignment:
| Q |
28 |
cctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
98 |
Q |
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| T |
26562873 |
cctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgtt |
26562803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 24890437 - 24890498
Alignment:
| Q |
265 |
tgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccct |
326 |
Q |
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| T |
24890437 |
tgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagccct |
24890498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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