View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_55 (Length: 340)

Name: NF2479_low_55
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_55
NF2479_low_55
[»] chr1 (6 HSPs)
chr1 (160-311)||(47704792-47704943)
chr1 (1-87)||(47704703-47704789)
chr1 (196-322)||(47745418-47745544)
chr1 (156-311)||(47759699-47759856)
chr1 (156-314)||(47717587-47717747)
chr1 (196-309)||(47712826-47712939)
[»] chr5 (1 HSPs)
chr5 (256-302)||(28830930-28830976)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 160 - 311
Target Start/End: Original strand, 47704792 - 47704943
Alignment:
Q  160 attaagtatgattaactaatgaaaattactaatcaccttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47704792 attaagtatgattaactaatgaaaattactaatcaccttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttc 47704891  T
Q  260 atatctaatattgcaacttggtttgataactcttccaccaatcttgttatta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47704892 atatctaatattgcaacttggtttgataactcttccaccaatcttgttatta 47704943  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 47704703 - 47704789
Alignment:
Q  1 ttgcttttttctgcaaaaatcaaaatcctctgctcaaggagaccaatgattaagaaatgctgtaaaataataccaacaaacaagtct 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47704703 ttgcttttttctgcaaaaatcaaaatcctctgctcaaggagaccaatgattaagaaatgctgtaaaataataccaacaaacaagtct 47704789  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 47745418 - 47745544
Alignment:
Q  196 cttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatatctaatattgcaacttggtttgataactcttcc 295  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||   |||||||||||||||| |||||| |||||| |||||| ||    
T  47745418 cttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttagtttgagaactctacc 47745517  T
Q  296 accaatcttgttattaaaaacacttgg 322  Q
    |||||||||||||| ||||| ||||||    
T  47745518 accaatcttgttataaaaaaaacttgg 47745544  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 47759699 - 47759856
Alignment:
Q  156 agcaattaagtatgattaactaatgaaaattactaatcaccttc---tgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggat 252  Q
    |||||||||| |||||||| |||||| ||||| |||| ||||||   |||||||||||||||| ||||||||||| | |  |||||| ||||||||  |     
T  47759699 agcaattaag-atgattaattaatgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctag 47759797  T
Q  253 tggtttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttatta 311  Q
     |||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||    
T  47759798 aggtttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttatta 47759856  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 314
Target Start/End: Original strand, 47717587 - 47717747
Alignment:
Q  156 agcaattaagtatgattaactaatgaaaattactaatcaccttc---tgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggat 252  Q
    |||||||||| |||||||| ||| || ||||| |||| ||||||   |||||||||||||||| ||||||||||||| |  |||||| ||||||||| ||    
T  47717587 agcaattaag-atgattaattaacgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattacaggtgtaggatcatagaaggaat 47717685  T
Q  253 tggtttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttattaaaa 314  Q
     | |||||| ||||||||||||||||||||||| |||| | || |||| |||||||||||||    
T  47717686 agatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaa 47717747  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 47712826 - 47712939
Alignment:
Q  196 cttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatatctaatattgcaacttggtttgataactcttcc 295  Q
    ||||||||||||||  ||||||| ||| ||||||||| |||||| || ||||| ||| |  ||||||||||||||| ||||||||||||| |||||| |     
T  47712826 cttctgatggggagtgttcatcttggtttattactgttgtaggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctaca 47712925  T
Q  296 accaatcttgttat 309  Q
    ||||||||||||||    
T  47712926 accaatcttgttat 47712939  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
Q  256 tttcatatctaatattgcaacttggtttgataactcttccaccaatc 302  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||||||    
T  28830930 tttcatatctaatattacaacttggtttcataactctagcaccaatc 28830976  T

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