View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_56 (Length: 339)
Name: NF2479_low_56
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 10034364 - 10034056
Alignment:
| Q |
19 |
tgaaagggatttgataatgaaaagagagaaagaacaaaataagctactgactaagctaactttcttgataatgattgatgcctttatttcattagatggt |
118 |
Q |
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| T |
10034364 |
tgaaagggatttgataatgaaaagagagaaagaacaaaataagctactgactaagctaactttcatgataatgattgatgcctttatttcattagatggt |
10034265 |
T |
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| Q |
119 |
agaatatatataggggaatattacataggtgactcatccttaaaggacagtcgtggctactgctacagttgtggcctaacggtcaaacagctggtggaaa |
218 |
Q |
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| T |
10034264 |
agaatatatataggggaatattacatgggtgactcatccttaaaggaaagtcctggctactgctacagctgtggcctaacggtcacacagctggtggaaa |
10034165 |
T |
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| Q |
219 |
tactagaatattccaataaggccttatcttaacctagtaggcaatcaaaatgaatcctatgctttactgctcaacatagtctattagatacttgggttgg |
318 |
Q |
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| T |
10034164 |
tactagaatattccactaaggccttatcttaacctagtaggcaatcaaaaggaatcctatgctttactgctcaacatagtcccttagatacttgggtcgg |
10034065 |
T |
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| Q |
319 |
gtcttgttc |
327 |
Q |
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| T |
10034064 |
gtcttgttc |
10034056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 298
Target Start/End: Complemental strand, 39606806 - 39606621
Alignment:
| Q |
110 |
ttagatggtagaatatatataggggaatattacataggtgactcatccttaaaggacagtcgtggctactgctacagttgtggcctaacggtcaaacagc |
209 |
Q |
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| T |
39606806 |
ttagatggtagta-atatataggggaataatacaatagtgactcatccttaaaggacagtcttggctactgctacagctgtatcctaacggtcctacaac |
39606708 |
T |
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| Q |
210 |
tggtggaaatactagaatattccaataaggccttatcttaacctagtaggcaatcaaaatgaatcctatgctttactgctcaacatagt |
298 |
Q |
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| T |
39606707 |
tggtggaaatacaagaatgttccactaaggccttatccattcctaataggcaa--acaaggtatcctatgctttactggtccacatagt |
39606621 |
T |
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