View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_57 (Length: 336)
Name: NF2479_low_57
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_57 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 5197292 - 5196984
Alignment:
| Q |
12 |
tcatcaaagtttgcaaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcat |
111 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5197292 |
tcatcaaagtttgcaaactggcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcat |
5197193 |
T |
|
| Q |
112 |
tgggtatcttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||| |
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|
| T |
5197192 |
tgggtatcttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgattggaatgggacctgacaagtgattatg |
5197093 |
T |
|
| Q |
212 |
tgataggttcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctct |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
5197092 |
tgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctct |
5196993 |
T |
|
| Q |
312 |
agaacttta |
320 |
Q |
| |
|
||||||||| |
|
|
| T |
5196992 |
agaacttta |
5196984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 317
Target Start/End: Complemental strand, 5174538 - 5174246
Alignment:
| Q |
25 |
caaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttacc |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5174538 |
caaattgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttacc |
5174439 |
T |
|
| Q |
125 |
actcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttcaag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||| |||||| |
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|
| T |
5174438 |
actcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgattggaatgggaccagacaagtgattatgtgatagattcaag |
5174339 |
T |
|
| Q |
225 |
gctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctagaact |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5174338 |
gctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctctagaact |
5174246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 4840984 - 4841279
Alignment:
| Q |
25 |
caaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttacc |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | ||||||||||||||| ||||||||||| |
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|
| T |
4840984 |
caaattgtcctgtactaggtggtgttccagagaggttgttgtatgacacattgaagatttctaaaaagttcaactgggttagttcatttggtatcttacc |
4841083 |
T |
|
| Q |
125 |
actcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttcaag |
224 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||||| |||||| |
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|
| T |
4841084 |
actcaagttattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgattggaatgggacctgacaagtgattatgtgatagattcaag |
4841183 |
T |
|
| Q |
225 |
gctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctagaacttta |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
4841184 |
gctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatccagtcataatctctagaacttta |
4841279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 320
Target Start/End: Complemental strand, 5215424 - 5215129
Alignment:
| Q |
25 |
caaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttacc |
124 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
5215424 |
caaactgtcctgtactaggtggtgttccagaaaagttgttgtatgatacattgaaggttgataaaaagttcaactgggttagttcatttggtatcttacc |
5215325 |
T |
|
| Q |
125 |
actcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttcaag |
224 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
5215324 |
actcaagttattgtatgataagtcaaggctctctatttgggtaagatttgaaaaagtaattggaataggaccagacaagtgattatgtgataggttcaag |
5215225 |
T |
|
| Q |
225 |
gctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctagaacttta |
320 |
Q |
| |
|
||||||| |||||| |||| |||||||| |||||||| | |||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5215224 |
gctctaacttgttgaaggtgaccaatttgagaagggatgagacctgttaggttattccatgataaatccaatccagtcatattctctagaacttta |
5215129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 5183893 - 5183588
Alignment:
| Q |
12 |
tcatcaaagtttgcaaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcat |
111 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || ||| || | | || ||||||||||| |
|
|
| T |
5183893 |
tcatcaaagtttgcaaattgtcttgtgctaggtggtgttccagaaaggttgttgtatgacacattgaagatttctaaagaggtcaacttggttagttcat |
5183794 |
T |
|
| Q |
112 |
tgggtatcttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatg |
211 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||| | ||||| |||||| |
|
|
| T |
5183793 |
aaggaatcttaccactcaagttattgtatgataagtcaaggctctctatttgggtaagttttgaaaaagttattggaataggaccagacaagtaattatg |
5183694 |
T |
|
| Q |
212 |
tgataggttcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctct |
311 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||| ||| | |
|
|
| T |
5183693 |
tgatagattcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatgatcttt |
5183594 |
T |
|
| Q |
312 |
agaact |
317 |
Q |
| |
|
|||||| |
|
|
| T |
5183593 |
agaact |
5183588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 4855487 - 4855785
Alignment:
| Q |
22 |
ttgcaaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatctt |
121 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| || | | || ||||||||||| |||||||| |
|
|
| T |
4855487 |
ttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaatatttctaaagaggtcaacttggttagttcataaggtatctt |
4855586 |
T |
|
| Q |
122 |
accactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttc |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4855587 |
accactcaagttattgtatgataagtcaaggctttctatttgggtaagatttgaaaaagtaattggaataggaccagacaagtgattatgtgataggttc |
4855686 |
T |
|
| Q |
222 |
aaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctagaacttta |
320 |
Q |
| |
|
|||||||||| | |||| |||| |||||||| |||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4855687 |
aaggctctaactggttgaaggtgaccaatttgagaagggatgacacctgttaggttattccatgataaatccaatccagtcatattctctagaacttta |
4855785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 5161600 - 5161302
Alignment:
| Q |
22 |
ttgcaaattgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatctt |
121 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | | ||||||||| |||| |||||||| |
|
|
| T |
5161600 |
ttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacgttgaaggttgataaaaaggtcaactgggttagctcataaggtatctt |
5161501 |
T |
|
| Q |
122 |
accactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttc |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
5161500 |
accactcaagttattgtatgataagtcaaggctctctatttcggtaagatttgaaaacgtaattggaataggacccgacaagtgattatgtgataggttc |
5161401 |
T |
|
| Q |
222 |
aaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctagaacttta |
320 |
Q |
| |
|
|||||| || |||||| |||| |||||||| ||||||||| |||||||| || ||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
5161400 |
aaggctaaaacttgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatccagtcattttctctaggacttta |
5161302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 313
Target Start/End: Complemental strand, 7143740 - 7143455
Alignment:
| Q |
28 |
attgtcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttaccact |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||| | | || |||||| | | || ||||||| | |
|
|
| T |
7143740 |
attgtcctatactaggtggtgttccagaaaggttgttgtaagacacattgaagatatctataaaggtcaagtgacttagttgagaagctaccttaccatt |
7143641 |
T |
|
| Q |
128 |
caagtcattgtatgataagtcaagactctctatttgggtaagatttgaaagagtgattggaataggagctttcaagtgattatgtgataggttcaaggct |
227 |
Q |
| |
|
||||| | | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||| |||| |||||| || |
|
|
| T |
7143640 |
caagttactctatgataagtcaagactctctatttgggtaagattggaaaaagtgattggaataggacctgacaagtgattatgttatagattcaagact |
7143541 |
T |
|
| Q |
228 |
ctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatctagtcatattctctag |
313 |
Q |
| |
|
| | | ||| | |||||||| || ||||| || || | |||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
7143540 |
cgatggttttgcatgtctccaagttcagaaggtatgactctagttacgatattgcatgataaatccaatccagtcatcatctctag |
7143455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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