View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_58 (Length: 331)
Name: NF2479_low_58
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 7330205 - 7329902
Alignment:
| Q |
18 |
ctaactttatttagactaannnnnnnnctattaaaagaaattgtgcaatttagatgctcatatatattataactcttaatttagatcttttataaataaa |
117 |
Q |
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| T |
7330205 |
ctaactttatttagactaattttttttctattaaaagaaattgtgcaatttagatgctcatatatattataactcttaatttagatcttttataaataaa |
7330106 |
T |
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| Q |
118 |
atcttcattgtttatataatctaattataatacattattattgtttcattgtcagtgtcattattattaatttatcgagtaatatgttgtaatttgtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330105 |
atcttcattgtttatataatctaattataatacattattattgtttcattgtcaatgtcattattattaatttatcgagtaatatgttgtaatttgtaaa |
7330006 |
T |
|
| Q |
218 |
ctcctcnnnnnnntgtttaatttgtaaagtacatgaattttcatgctgcaattttaaatactggtttacgtttggttggagaatgattttggtgggattc |
317 |
Q |
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| T |
7330005 |
ctcctcaaaaaaatgtttaatttgtaaagtacatgaattttcatggtgcaattttaaatactggtttacgtttggttggagaatgattttggtgggattc |
7329906 |
T |
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| Q |
318 |
tata |
321 |
Q |
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|||| |
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| T |
7329905 |
tata |
7329902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 2505553 - 2505686
Alignment:
| Q |
45 |
ctattaaaagaaattgtgcaatttagatgctcatatatattataactcttaatttagatcttttataaataaaatcttcattgtttat---ataatctaa |
141 |
Q |
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||||||||| ||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
2505553 |
ctattaaaa-aaattgtgcaacttagatgcacttatatattgtaactcttaatttagatcttttataaataaaatactcattgtttatataataatctaa |
2505651 |
T |
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| Q |
142 |
ttataatacattattattgtttcattgtcagtgtca |
177 |
Q |
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| T |
2505652 |
taattatacattaata-tgttttattgtcagtgtca |
2505686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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