View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_59 (Length: 330)
Name: NF2479_low_59
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 41651107 - 41651411
Alignment:
| Q |
13 |
attctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagcgttagccgtgccttggtgactgttagattcagatcaaat---tca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41651107 |
attctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagtgttagccgtgccttggtgactgttagattcagatcaaatagttca |
41651206 |
T |
|
| Q |
110 |
caaaatatgtggattttgttataatcaaaattaccgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctttctgacggttatgca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651207 |
caaaatatgtggattttgttataatcaaaattaccgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctttctgacggttatgca |
41651306 |
T |
|
| Q |
210 |
ttttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651307 |
ttttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaa |
41651406 |
T |
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| Q |
310 |
atttt |
314 |
Q |
| |
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||||| |
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| T |
41651407 |
atttt |
41651411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 43226850 - 43226719
Alignment:
| Q |
184 |
caacactcctttctgacggttatgcattttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattct-gttttttac |
282 |
Q |
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|||||||||| ||||||||||||||| || || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
43226850 |
caacactcctctctgacggttatgcacttcaactgtttaagatatttttgtgtttttaattcaatcatgccaaaatcaaacatgaattctatttttttac |
43226751 |
T |
|
| Q |
283 |
atttgcatattggcaaactaatgccaaatttt |
314 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
43226750 |
atttgcatattggcacactaatgccaaatttt |
43226719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 43227085 - 43226965
Alignment:
| Q |
13 |
attctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagcgttag-ccgtgccttggtgactgttagattcagatcaaa---ttc |
108 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||| |
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| T |
43227085 |
attctgaatctctcaagctgatgtgaaattgggttgccatagtgaattggtgagcgttagtccgtgccttgatgaccgttagattcagatcaaatagttc |
43226986 |
T |
|
| Q |
109 |
acaaaatatgtggattttgtt |
129 |
Q |
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||||||||||||||||||||| |
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| T |
43226985 |
acaaaatatgtggattttgtt |
43226965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 41657425 - 41657495
Alignment:
| Q |
244 |
tcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaatttt |
314 |
Q |
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|||||||||||||| | |||||||| || | ||| |||||||| |||||||||||||| |||||||||||| |
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| T |
41657425 |
tcaatcatgccaaagtgaaacatgacttatatttcttacattttcatattggcaaactgatgccaaatttt |
41657495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 43205581 - 43205484
Alignment:
| Q |
217 |
tgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaatttt |
314 |
Q |
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|||||||| | |||||||||||||| |||||| | || ||| ||||||||||||||||||| | | || ||||||||||||| |||||||||||| |
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| T |
43205581 |
tgtttaagttgtttctgtgtttttaattcaattaggcgaaagtcaaacatgaattctgtttctgctgtctgtatattggcaaactgatgccaaatttt |
43205484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 25929054 - 25928985
Alignment:
| Q |
244 |
tcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaatttt |
314 |
Q |
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|||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||| |
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| T |
25929054 |
tcaaacatgccaaaatcaaacatgaattctgattttaa-atttgcatattggcaaactgatgccaaatttt |
25928985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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