View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_6 (Length: 609)

Name: NF2479_low_6
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_6
NF2479_low_6
[»] chr3 (21 HSPs)
chr3 (14-594)||(3753719-3754299)
chr3 (76-332)||(4142736-4142992)
chr3 (76-332)||(4158546-4158802)
chr3 (380-594)||(4142489-4142709)
chr3 (79-197)||(3745168-3745286)
chr3 (380-591)||(4158302-4158519)
chr3 (71-176)||(967861-967966)
chr3 (71-191)||(2679178-2679298)
chr3 (502-564)||(2441622-2441684)
chr3 (79-201)||(2651142-2651264)
chr3 (507-568)||(3745614-3745675)
chr3 (73-191)||(2687085-2687203)
chr3 (95-183)||(803972-804060)
chr3 (510-561)||(12132703-12132754)
chr3 (102-176)||(1003714-1003788)
chr3 (102-176)||(1021711-1021785)
chr3 (70-176)||(1937720-1937826)
chr3 (512-566)||(2686698-2686752)
chr3 (383-449)||(3745484-3745550)
chr3 (134-210)||(1891770-1891846)
chr3 (508-564)||(7432433-7432489)
[»] chr5 (3 HSPs)
chr5 (79-247)||(11081379-11081547)
chr5 (508-562)||(2067457-2067511)
chr5 (518-566)||(1428079-1428127)
[»] chr8 (1 HSPs)
chr8 (70-203)||(19727108-19727241)
[»] chr7 (2 HSPs)
chr7 (510-564)||(1078566-1078620)
chr7 (383-454)||(1078688-1078762)
[»] chr4 (2 HSPs)
chr4 (514-564)||(20020151-20020201)
chr4 (68-169)||(20020552-20020653)
[»] chr1 (1 HSPs)
chr1 (103-179)||(25611754-25611830)


Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Original strand, 3753719 - 3754299
Alignment:
Q  14 atcacaatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753719 atcacaatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatg 3753818  T
Q  114 taggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgtgtg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3753819 taggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactcagtgtg 3753918  T
Q  214 tccatcgctcggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcagagacataacct 313  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3753919 tccatcgcttggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcacagacataacct 3754018  T
Q  314 ctaacttcatacaatctgagtataacctttctaatgaagatcggacttatggcaaactttattttatcattggctcttgcaacggcattgtgtgtattgc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754019 ctaacttcatacaatctgagtataacctttctaatgaagatcggacttatggcaaactttattttatcattggctcttgcaacggcattgtgtgtattgc 3754118  T
Q  414 agacaatcataacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcccctttatgaaaagtcgaatggtcctactctcatgacg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754119 agacaatcataacggcttagttatattgtggaacccttccacaaaaaaaatcaagcagttgcccctttatgaaaagtcgaatggtcctactctcatgacg 3754218  T
Q  514 tttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctacctagttcttgatgaggattat 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754219 tttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctacctagttcttgatgaggattat 3754299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 4142992 - 4142736
Alignment:
Q  76 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 175  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4142992 ccaactcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaa 4142893  T
Q  176 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 274  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||| |||  ||  |||   ||||| |||||||    
T  4142892 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttccgaaactac-gcctatgactcaagaaagtacattctca 4142794  T
Q  275 catcttatccaatcgactctattttcagagacataacctctaacttcatacaatctga 332  Q
    ||||||||||| | ||||||  ||||| |||||||||||||||||||| |||||||||    
T  4142793 catcttatccactggactctgatttcacagacataacctctaacttcacacaatctga 4142736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 4158802 - 4158546
Alignment:
Q  76 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 175  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  4158802 ccaactcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaa 4158703  T
Q  176 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 274  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||  |||  ||  |||   ||||| |||||||    
T  4158702 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttcctaaacta-tgcctatgactcaagaaagtacattctca 4158604  T
Q  275 catcttatccaatcgactctattttcagagacataacctctaacttcatacaatctga 332  Q
    ||||||| ||| ||||||||  ||||| |||||||| ||||||||||| |||||||||    
T  4158603 catcttacccactcgactctgatttcacagacataaactctaacttcacacaatctga 4158546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 380 - 594
Target Start/End: Complemental strand, 4142709 - 4142489
Alignment:
Q  380 tcattggctcttgcaacggcattgtgtgtattgcagacaatca---taacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcc 476  Q
    ||||||||||||||||||||||||||||| ||||||||||  |   ||   ||||||||||||  ||||||||||||||        ||||| |||||||    
T  4142709 tcattggctcttgcaacggcattgtgtgtcttgcagacaacgaatatacaagcttagttatatgttggaacccttccacaagaaaattcaaggagttgcc 4142610  T
Q  477 cctttatgaaaagtc---gaatggtcctactctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctac 573  Q
    ||||| ||||||| |   || |||||  | | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  4142609 cctttttgaaaagcccacgactggtctaaatgtcatgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttgactac 4142510  T
Q  574 ctagttcttgatgaggattat 594  Q
    | | |||||||||||||||||    
T  4142509 caatttcttgatgaggattat 4142489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 3745168 - 3745286
Alignment:
Q  79 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 178  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3745168 actcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatat 3745267  T
Q  179 ccgatccaaaattcgtcaa 197  Q
    | ||||| ||||| |||||    
T  3745268 ctgatcccaaatttgtcaa 3745286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 380 - 591
Target Start/End: Complemental strand, 4158519 - 4158302
Alignment:
Q  380 tcattggctcttgcaacggcattgtgtgtattgcagacaatca---taacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcc 476  Q
    ||||||| ||||||||||||||||||||||||||||||||  |   ||   ||||||||||||  ||||||||||| ||        ||||| |||||||    
T  4158519 tcattggttcttgcaacggcattgtgtgtattgcagacaacgaatatacaagcttagttatatgttggaacccttcaacaagaaaattcaaggagttgcc 4158420  T
Q  477 cctttatgaaaagtc---gaatggtcctactctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctac 573  Q
    ||||| ||||||| |   || ||||   | | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  |||    
T  4158419 cctttttgaaaagcccatgactggtgtaaatgtcatgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttgaatac 4158320  T
Q  574 ctagttcttgatgaggat 591  Q
    ||||||||||||||||||    
T  4158319 ctagttcttgatgaggat 4158302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 967861 - 967966
Alignment:
Q  71 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 170  Q
    ||||||| |||||||||| |||  ||||||||||||| ||||||||| || |||||||| || || | | |||||||||||| |||||||| |||||||     
T  967861 cacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattc 967960  T
Q  171 tctaat 176  Q
    ||||||    
T  967961 tctaat 967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 2679298 - 2679178
Alignment:
Q  71 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 170  Q
    ||||||| |||||||||| |||| |||| ||||| || || | |||||||| ||| || ||| |||||| | |||||||||| |||||||||||||| |     
T  2679298 cacttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatc 2679199  T
Q  171 tctaatatccgatccaaaatt 191  Q
    ||| || ||||||||||||||    
T  2679198 tctgatctccgatccaaaatt 2679178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 2441622 - 2441684
Alignment:
Q  502 actctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 564  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  2441622 actcacatggcgtttggctttggctatgattcttttaatgataattacaaagtggttgttgtt 2441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 2651264 - 2651142
Alignment:
Q  79 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 178  Q
    |||||||||| |||| | |||| |||||| ||| ||||||||||||||||| || || ||| | | |||||||| |||||| ||||||||| ||| || |    
T  2651264 actcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatct 2651165  T
Q  179 ccgatccaaaattcgtcaagaaa 201  Q
    ||||||  |||||| ||| ||||    
T  2651164 ccgatcacaaattcatcatgaaa 2651142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 568
Target Start/End: Original strand, 3745614 - 3745675
Alignment:
Q  507 catgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttg 568  Q
    |||| |||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||    
T  3745614 catgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgttcttg 3745675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 2687203 - 2687085
Alignment:
Q  73 cttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttc 172  Q
    ||||| || ||||||| |||| |||| ||||| || || | |||||| | ||| || ||| |||||| | |||||||||| |||||||||||||| | ||    
T  2687203 cttcccacccttcctttcgacctcatcccagatatactgtctaggttgcaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc 2687104  T
Q  173 taatatccgatccaaaatt 191  Q
    | || ||||||||||||||    
T  2687103 tgatctccgatccaaaatt 2687085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 804060 - 803972
Alignment:
Q  95 tcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgat 183  Q
    ||||| |||||||  | ||| ||||||| || |||||| | |||| | ||||||| ||||||||||||||||||| |||||||| ||||    
T  804060 tcattgcagaaattttgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaatatgcgat 803972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 12132703 - 12132754
Alignment:
Q  510 gacgtttggctttggctatgattctttaaacgataattacaaggtggttgtt 561  Q
    |||| |||||||||||||||||||||  |  |||||||||||||||||||||    
T  12132703 gacgcttggctttggctatgattcttgtactgataattacaaggtggttgtt 12132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 1003714 - 1003788
Alignment:
Q  102 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 176  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1003714 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1003788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 1021711 - 1021785
Alignment:
Q  102 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 176  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1021711 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1021785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 1937826 - 1937720
Alignment:
Q  70 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 169  Q
    |||||||| ||||||||||  ||  |||||||||||||||| | |||| || |||| ||  || ||||  ||||||| || ||||||||||||| |||||    
T  1937826 tcacttcccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaatt 1937727  T
Q  170 ttctaat 176  Q
     ||||||    
T  1937726 ctctaat 1937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Complemental strand, 2686752 - 2686698
Alignment:
Q  512 cgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttct 566  Q
    |||||||||| ||||| |||||||| || || |||||||||||| ||||||||||    
T  2686752 cgtttggcttcggctacgattcttttaaggagaattacaaggtgattgttgttct 2686698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 3745484 - 3745550
Alignment:
Q  383 ttggctcttgcaacggcattgtgtgtattgcagacaatcataacggcttagttatattgtggaaccc 449  Q
    |||||||||||||||||||  | |||||||||||  || |||| ||||| |||||| ||||||||||    
T  3745484 ttggctcttgcaacggcatcctttgtattgcagatgattataaaggcttggttatactgtggaaccc 3745550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 1891846 - 1891770
Alignment:
Q  134 tccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgt 210  Q
    |||||| | |||||| ||| |||||||||||||||| |||||| |||||| | || |||| || |||||| ||||||    
T  1891846 tccttcaactccgatctgtctgcaagtcatggaattctctaatctccgattccaagttcgccatgaaacacctccgt 1891770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 7432489 - 7432433
Alignment:
Q  508 atgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 564  Q
    ||||||||||| |||||||||||||| || |  ||||||||||||||| || |||||    
T  7432489 atgacgtttggttttggctatgattcatttagtgataattacaaggtgattattgtt 7432433  T

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Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 11081379 - 11081547
Alignment:
Q  79 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 178  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| | ||||||    
T  11081379 actcttccttccgatctcattctagaaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaatat 11081478  T
Q  179 ccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactaca 247  Q
    | ||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||    
T  11081479 ctgatcccaaattcgtcaagaaacaactccgtgtgtccgccactcgaaacctccacttcctaaactaca 11081547  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 2067511 - 2067457
Alignment:
Q  508 atgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttg 562  Q
    ||||||||||| ||||||||||||||||| |  |||| |||||||||||||||||    
T  2067511 atgacgtttggttttggctatgattcttttagagatacttacaaggtggttgttg 2067457  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 1428127 - 1428079
Alignment:
Q  518 gctttggctatgattctttaaacgataattacaaggtggttgttgttct 566  Q
    |||| |||||||||| |||||  ||||||||||||||| ||||||||||    
T  1428127 gcttcggctatgattgtttaacggataattacaaggtgattgttgttct 1428079  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 19727108 - 19727241
Alignment:
Q  70 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 169  Q
    |||||||| |||||||||| |||  ||||||||||||| ||| ||||| |||| || || ||| || | |  |||||||||||||||||||| | |||||    
T  19727108 tcacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaatt 19727207  T
Q  170 ttctaatatccgatccaaaattcgtcaagaaaca 203  Q
     |||||| || ||||  ||||||| ||| |||||    
T  19727208 ctctaatctctgatcacaaattcgccaacaaaca 19727241  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 1078620 - 1078566
Alignment:
Q  510 gacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 564  Q
    |||| ||||||||||||| |||||||| | ||| |||||||||||||||||||||    
T  1078620 gacgcttggctttggctacgattcttttaccgagaattacaaggtggttgttgtt 1078566  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 1078762 - 1078688
Alignment:
Q  383 ttggctcttgcaacggcattgtgtgtattgcaga---caatcataacggcttagttatattgtggaacccttcca 454  Q
    ||||||||||||| |||||  | |||||||||||   |||| | || |||||||||||||||| |||||||||||    
T  1078762 ttggctcttgcaatggcatcctttgtattgcagatgacaatgacaaaggcttagttatattgttgaacccttcca 1078688  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 20020201 - 20020151
Alignment:
Q  514 tttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 564  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||||    
T  20020201 tttggctttggctatgattcttcaacggacaattacaaggtggttgttgtt 20020151  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 20020653 - 20020552
Alignment:
Q  68 attcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaa 167  Q
    |||||||||| | |||||||| |||| |||||  |||||| || ||||||||||| || ||| || |||||| | | |||||||| || || ||||||||    
T  20020653 attcacttcccattcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaa 20020554  T
Q  168 tt 169  Q
    ||    
T  20020553 tt 20020552  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 25611830 - 25611754
Alignment:
Q  103 gaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatc 179  Q
    |||||||| |||||| | ||||| |||||| |||||| |||| | || || |||||||||||||||| |||||||||    
T  25611830 gaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaatatc 25611754  T

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