View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_61 (Length: 329)
Name: NF2479_low_61
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 22532799 - 22533105
Alignment:
| Q |
18 |
aattcaaatcttagttggtaaatatttaattcaaatcttatgaagactcaatttgaattcaattgctgtttttaggcctttactgaaaagtattttgtca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
22532799 |
aattcaaatcttagttggtaaatatttaattcaaatcttatgaagactcaatttgaattcaattgctgtttttaggcctttattgaaaattattttgtca |
22532898 |
T |
|
| Q |
118 |
gtaatagagaactttgatactttatttaatgctaaccattcggactcaaacccctaaccttatctcttatctaaaataactattatatatacacactttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22532899 |
gtaatagagaactttgatactttatttaatgctaaccattcggactcaaacccctaaccttatctcttatctaaaataactattatatatacacactttg |
22532998 |
T |
|
| Q |
218 |
aagtataggtgatttccctttctgtttgaagagtatataaatatatggataggtacatattagtacttttaatcnnnnnnngggagcatgtttatgtctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
22532999 |
aagtataggtgatttccctttctgtttgaagagtatataaatatatggataggtacatattagtacttttaatcaaaaaaagggagcatgtttatgtttg |
22533098 |
T |
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| Q |
318 |
tgctgct |
324 |
Q |
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|| |||| |
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| T |
22533099 |
tgatgct |
22533105 |
T |
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