View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_62 (Length: 324)
Name: NF2479_low_62
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 46 - 305
Target Start/End: Original strand, 13847686 - 13847946
Alignment:
| Q |
46 |
cagggaaaaaactcctttaatgtaaacactcacaacatgtaacnnnnnnnnnnnc--tgacaacacaaaaactccttttcatctgtagaaaatttattga |
143 |
Q |
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| T |
13847686 |
cagggaaaaaacttctttcatgtaaacactcacaacatgtaaccaaaaaaaaaacactgacaacacaaaaactccttttcatctgtagaaaatttattga |
13847785 |
T |
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| Q |
144 |
tgggaaattttaaaatattcgatcnnnnnnngttaaagttgtaaatcttaatcattattcaggaggtgatttactaatcttcgatcaaacacttgagaaa |
243 |
Q |
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| T |
13847786 |
tgggaaatttcaaaatattcgatctttttt-gttaaagttgtaaatcttaatcattattcaggaggtgatttactaatcttcgatcaaacacttgagaaa |
13847884 |
T |
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| Q |
244 |
gacaaccattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaa |
305 |
Q |
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| T |
13847885 |
gacaaccattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaa |
13847946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 100 - 305
Target Start/End: Original strand, 34343496 - 34343699
Alignment:
| Q |
100 |
ctgacaacacaaaaactccttttcatctgtagaaaatttattgatgggaaattttaaaatattcgatcnnnnnnn-gttaaagttgtaaatcttaatcat |
198 |
Q |
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| T |
34343496 |
ctgacaacacaaaaactccttttcatctgtagaaaatttattgatgggaaatttcaaaatattcgatcttttttttgttaaagttgtaaatcttaattat |
34343595 |
T |
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| Q |
199 |
tattcaggaggtgatttactaatcttcgatcaaacacttgagaaagacaaccattaaaaaattactaattaaaatctagtgtttgaaataaaattggagc |
298 |
Q |
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| T |
34343596 |
tattcaggaggtgatttactaatcttcgatcaaacacttgagaaagacaaccattaaaaaattac---ttaaaatctagtgtttgaaataaaattggagc |
34343692 |
T |
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| Q |
299 |
ttgaaaa |
305 |
Q |
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||||||| |
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| T |
34343693 |
ttgaaaa |
34343699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 34343437 - 34343480
Alignment:
| Q |
46 |
cagggaaaaaactcctttaatgt-aaacactcacaacatgtaac |
88 |
Q |
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| T |
34343437 |
cagggaaaaaactcctttcatgtaaaacactcacaacatgtaac |
34343480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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