View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_66 (Length: 322)
Name: NF2479_low_66
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 17578118 - 17577928
Alignment:
| Q |
119 |
cttctgcttctgatttcgccgaattcactgatttcaacgtgtgtttttatttgcattcagagaattggtgatgtttcgaaggagattaagagagtgagag |
218 |
Q |
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| T |
17578118 |
cttctgcttctgatttcgccgaattcactgatttcaacgtgtgtttttatttgcattcagagaattggtgatgtttcgaaggagattaagagagtgagag |
17578019 |
T |
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| Q |
219 |
cgcaaatggaagaagatgaacaattggcaacgcttatgagaggtcttcgtggtcagagtcttaatgattcgctctttgctgaggatgatgt |
309 |
Q |
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| T |
17578018 |
cgcaaatggaagaagatgaacaattggcaacgcttatgagaggtcttcgtggtcagagtcttaatgattcgctctttgctgaggatgatgt |
17577928 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 17578214 - 17578144
Alignment:
| Q |
22 |
gtcactaccgtcaacggttcttcttcaaggtctccgcctgccaaacctgtcaacggtgtctctggggtaaa |
92 |
Q |
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| T |
17578214 |
gtcactaccgtcaacggttcttcttcaaggtctccgcctgccaaacctgtcaacggtgtctctggggtaaa |
17578144 |
T |
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