View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_67 (Length: 322)
Name: NF2479_low_67
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_67 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5925165 - 5925469
Alignment:
| Q |
1 |
catcctataacggcctattctaatctttacttacacgtgtcggtcacttttcaaaaatatcatgtacggaaccggttactatacttcacattctccaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5925165 |
catcctataacggcctattctaatctttacttacacgtgtcggtcacttttcaaaaatatcctgtacggaaccggttactatacttcacattctccaatg |
5925264 |
T |
|
| Q |
101 |
ctacggcactttcctctcaacttcccttctgcaattcactaattaatttattatttatttattacagtaaagaataaaaactcctcaaactgacaatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5925265 |
ctacggcactttcctctcaacttcccttctgcaattcactaattaatttattatttatttattacagtaaagaataaaaactcctcaaactgacaatctt |
5925364 |
T |
|
| Q |
201 |
agcgttagaaatgcattttaaaattatcatacccacgtatttgtcagacaaaaaatgtttataaaaggataatgaattgataac-atgaaagtggaggat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
5925365 |
agcgttagaaatgcattttaaaattatcatacccacgtatttgtcagacaaaaaatgtttataaaaggataatgaattgataacaatgaaagtgga-gat |
5925463 |
T |
|
| Q |
300 |
tagggg |
305 |
Q |
| |
|
|||||| |
|
|
| T |
5925464 |
tagggg |
5925469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 32152939 - 32152886
Alignment:
| Q |
252 |
aaaatgtttataaaaggataatgaattgataacatgaaagtggaggattagggg |
305 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32152939 |
aaaatgttttaaaaaagataatgaattgataatatgaaagtggaggattagggg |
32152886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 32145260 - 32145207
Alignment:
| Q |
252 |
aaaatgtttataaaaggataatgaattgataacatgaaagtggaggattagggg |
305 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
32145260 |
aaaatgttttaaaaaagataatgaattgattatatgaaagtggaggattagggg |
32145207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 32153185 - 32153145
Alignment:
| Q |
86 |
tcacattctccaatgctacggcactttcctctcaacttccc |
126 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
32153185 |
tcacattctccaatgctatgacactttcctctcaacttccc |
32153145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 32145784 - 32145744
Alignment:
| Q |
86 |
tcacattctccaatgctacggcactttcctctcaacttccc |
126 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
32145784 |
tcacattctccaatgctatgatactttcctctcaacttccc |
32145744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University