View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_68 (Length: 321)
Name: NF2479_low_68
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_68 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5697376 - 5697056
Alignment:
| Q |
1 |
tatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatcacctttagaatattagggtaaattatgttgggacctct |
100 |
Q |
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| T |
5697376 |
tatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatcacctttagaatattagggtcaattatgttgggacctct |
5697277 |
T |
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| Q |
101 |
gctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattga |
200 |
Q |
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| T |
5697276 |
gctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattga |
5697177 |
T |
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| Q |
201 |
acaagttttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaaggtacataatttgcatgagtgttattgttcacaaggataa |
300 |
Q |
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| T |
5697176 |
acaagttttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaaggtacatcatttgcatgagttttattgttcccaaggataa |
5697077 |
T |
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| Q |
301 |
ttccaacatcaccagctcttt |
321 |
Q |
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| T |
5697076 |
ttccaacaccaccagctcttt |
5697056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 63 - 321
Target Start/End: Complemental strand, 5685144 - 5684886
Alignment:
| Q |
63 |
acctttagaatattagggtaaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
162 |
Q |
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| T |
5685144 |
acctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5685045 |
T |
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| Q |
163 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaagg |
262 |
Q |
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| T |
5685044 |
gttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaagg |
5684945 |
T |
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| Q |
263 |
tacataatttgcatgagtgttattgttcacaaggataattccaacatcaccagctcttt |
321 |
Q |
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| T |
5684944 |
tacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctcttt |
5684886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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