View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_69 (Length: 317)
Name: NF2479_low_69
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 34629835 - 34630144
Alignment:
| Q |
1 |
acgatgccaataaactaaacaaaatattttctacagattatatatgaaaattctggattttcaggatctgttcaaaattcaaagtcttaatatagataat |
100 |
Q |
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| T |
34629835 |
acgatgccaataaactaaacaaaatattttctacagattatatatgaaaattctggattttcaggatctgttcaaaattcaaagtcttgatatagataat |
34629934 |
T |
|
| Q |
101 |
ccaagtatggaatcaagctcaattaacattgtttaagtagaacaagccataatatcccaaatcagacaaagatagatgcaaaaccaagcaagcgatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629935 |
gcaagtatggaatcaagctcaattaacattgtttaagtagaacaagccataatatcccaaatcagacaaagatagatgcaaaaccaagcaagcgatttaa |
34630034 |
T |
|
| Q |
201 |
aagttaaaatcctgagaaatggttttcttacccatctgtgcttatcaaactgtcaaaagcagatataaacgccttgcacaaatctacaagagcactggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34630035 |
aagttaaaatcctgagaaatggttttcttacccatctgtgcttatcaaactgtcaaaagcagatataaacgcctcgcacaaatctacaagagcactggcc |
34630134 |
T |
|
| Q |
301 |
ccttcatttc |
310 |
Q |
| |
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||||| |||| |
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| T |
34630135 |
ccttcgtttc |
34630144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 14298744 - 14298857
Alignment:
| Q |
182 |
aaccaagcaagcgatttaaaagttaaaatcctgagaaatggttttcttacccatctgtgcttatcaaactgtcaaaagcagatataaacgccttgcacaa |
281 |
Q |
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||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| || |||||| |
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| T |
14298744 |
aaccaaggaagcgatttac--gttataatcctgagaaatggttttcttacccatctgtgcttctcaaactctcaaaagtagatataaactcccggcacaa |
14298841 |
T |
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| Q |
282 |
atctacaagagcactg |
297 |
Q |
| |
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|||||||||||||||| |
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| T |
14298842 |
atctacaagagcactg |
14298857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14298620 - 14298694
Alignment:
| Q |
11 |
taaactaaacaaaatattttctacagattatatatgaaaattctggattttcaggatctgttcaaaattcaaagt |
85 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14298620 |
taaactaaacaaaatgttttcaacaggttatatatgaaaattctggattttcaggatctgttcaaaattcaaagt |
14298694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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