View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_7 (Length: 602)

Name: NF2479_low_7
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_7
NF2479_low_7
[»] chr3 (21 HSPs)
chr3 (11-398)||(4170768-4171154)
chr3 (457-590)||(4170581-4170714)
chr3 (11-301)||(50518760-50519047)
chr3 (13-311)||(37123491-37123778)
chr3 (11-202)||(14194152-14194340)
chr3 (11-91)||(14893260-14893340)
chr3 (11-219)||(25647888-25648093)
chr3 (18-201)||(33143630-33143813)
chr3 (32-116)||(41039462-41039546)
chr3 (21-115)||(14280230-14280323)
chr3 (11-87)||(32010121-32010197)
chr3 (12-307)||(28937400-28937681)
chr3 (208-310)||(14879547-14879649)
chr3 (11-88)||(25594179-25594256)
chr3 (21-115)||(48893034-48893128)
chr3 (33-82)||(1652569-1652617)
chr3 (22-87)||(37998891-37998956)
chr3 (31-87)||(46358073-46358129)
chr3 (101-153)||(46358167-46358219)
chr3 (29-73)||(47946049-47946092)
chr3 (20-67)||(14754963-14755010)
[»] chr2 (28 HSPs)
chr2 (11-306)||(7696077-7696371)
chr2 (11-232)||(13337449-13337660)
chr2 (11-176)||(4974990-4975155)
chr2 (11-176)||(4992898-4993063)
chr2 (11-310)||(37770324-37770612)
chr2 (11-310)||(10173250-10173547)
chr2 (11-249)||(12342992-12343215)
chr2 (11-308)||(34230314-34230610)
chr2 (185-308)||(16952230-16952350)
chr2 (185-308)||(17022895-17023015)
chr2 (185-308)||(17060201-17060321)
chr2 (12-88)||(41113412-41113488)
chr2 (11-90)||(41086475-41086554)
chr2 (18-88)||(4472276-4472346)
chr2 (28-78)||(22884802-22884852)
chr2 (11-77)||(33788296-33788362)
chr2 (14-90)||(29139624-29139700)
chr2 (11-101)||(29997265-29997355)
chr2 (11-90)||(33533415-33533500)
chr2 (31-78)||(27740331-27740378)
chr2 (208-310)||(41086664-41086767)
chr2 (11-77)||(42802427-42802496)
chr2 (11-81)||(25504559-25504629)
chr2 (185-310)||(14106368-14106490)
chr2 (33-68)||(40360652-40360687)
chr2 (12-82)||(1269791-1269861)
chr2 (28-81)||(44594018-44594071)
chr2 (11-75)||(29487447-29487510)
[»] chr4 (24 HSPs)
chr4 (11-310)||(38636905-38637203)
chr4 (11-310)||(41117639-41117937)
chr4 (102-306)||(49528187-49528390)
chr4 (18-307)||(16832698-16832988)
chr4 (95-300)||(25753293-25753499)
chr4 (11-310)||(19814888-19815190)
chr4 (11-308)||(22810844-22811128)
chr4 (12-83)||(42719494-42719565)
chr4 (11-88)||(28967208-28967285)
chr4 (13-82)||(48098645-48098714)
chr4 (24-90)||(25754206-25754272)
chr4 (143-302)||(19673219-19673377)
chr4 (21-88)||(2061513-2061580)
chr4 (139-310)||(48098444-48098618)
chr4 (11-80)||(46487621-46487690)
chr4 (12-164)||(49747785-49747937)
chr4 (33-81)||(43077307-43077355)
chr4 (14-57)||(9262807-9262850)
chr4 (12-67)||(52009179-52009234)
chr4 (30-88)||(39420726-39420784)
chr4 (20-77)||(35947987-35948044)
chr4 (13-75)||(20632170-20632233)
chr4 (33-71)||(16502053-16502091)
chr4 (33-77)||(35336914-35336958)
[»] chr5 (24 HSPs)
chr5 (11-306)||(8297583-8297880)
chr5 (14-310)||(26405222-26405515)
chr5 (11-300)||(26045634-26045924)
chr5 (14-203)||(7682770-7682960)
chr5 (29-153)||(30097601-30097725)
chr5 (11-90)||(25992332-25992411)
chr5 (11-181)||(10174921-10175089)
chr5 (20-251)||(14302124-14302356)
chr5 (20-88)||(13953928-13953996)
chr5 (208-310)||(7195109-7195210)
chr5 (19-178)||(33109881-33110035)
chr5 (21-153)||(7194982-7195113)
chr5 (11-92)||(33258560-33258641)
chr5 (8-87)||(5187276-5187355)
chr5 (13-73)||(27713421-27713481)
chr5 (33-81)||(31742504-31742552)
chr5 (11-81)||(8731278-8731348)
chr5 (5-75)||(23426646-23426716)
chr5 (50-115)||(37108105-37108170)
chr5 (31-79)||(24071952-24072000)
chr5 (11-107)||(7391668-7391766)
chr5 (18-88)||(4914177-4914247)
chr5 (39-68)||(34345831-34345860)
chr5 (28-88)||(25657808-25657867)
[»] chr7 (21 HSPs)
chr7 (12-310)||(24324470-24324767)
chr7 (11-116)||(42532930-42533035)
chr7 (14-135)||(16828774-16828894)
chr7 (11-202)||(33719183-33719375)
chr7 (186-310)||(8745264-8745388)
chr7 (14-115)||(16954795-16954895)
chr7 (20-105)||(39013558-39013643)
chr7 (11-67)||(6726090-6726146)
chr7 (11-67)||(48058343-48058399)
chr7 (21-203)||(1321011-1321192)
chr7 (21-88)||(6716417-6716484)
chr7 (11-82)||(36674809-36674880)
chr7 (20-83)||(44755906-44755968)
chr7 (41-87)||(3478683-3478729)
chr7 (11-76)||(28534175-28534240)
chr7 (11-82)||(8745469-8745539)
chr7 (29-66)||(22567781-22567818)
chr7 (176-310)||(34390075-34390206)
chr7 (11-67)||(47456744-47456800)
chr7 (139-310)||(6716535-6716707)
chr7 (31-78)||(13312180-13312227)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-310)||(36820-37117)
[»] chr8 (8 HSPs)
chr8 (12-179)||(17656408-17656575)
chr8 (21-255)||(10248246-10248482)
chr8 (12-87)||(12197747-12197822)
chr8 (12-87)||(12442175-12442250)
chr8 (210-310)||(17656872-17656972)
chr8 (49-88)||(2273760-2273799)
chr8 (27-88)||(8862308-8862370)
chr8 (28-78)||(9831691-9831741)
[»] chr1 (32 HSPs)
chr1 (26-164)||(34775129-34775267)
chr1 (14-115)||(27102489-27102589)
chr1 (11-310)||(31290692-31290989)
chr1 (11-90)||(9313011-9313090)
chr1 (31-203)||(32882583-32882757)
chr1 (19-160)||(46768437-46768579)
chr1 (18-238)||(11439698-11439919)
chr1 (12-90)||(4431006-4431084)
chr1 (12-240)||(10785133-10785359)
chr1 (19-81)||(32863225-32863287)
chr1 (11-83)||(376477-376549)
chr1 (213-308)||(41126348-41126443)
chr1 (121-308)||(16577374-16577560)
chr1 (11-78)||(37200485-37200552)
chr1 (20-115)||(52278589-52278682)
chr1 (14-76)||(17033939-17034001)
chr1 (11-87)||(9557241-9557317)
chr1 (28-87)||(38544404-38544463)
chr1 (42-103)||(16149093-16149155)
chr1 (31-77)||(46603705-46603751)
chr1 (32-81)||(50588964-50589014)
chr1 (12-88)||(49820488-49820565)
chr1 (30-81)||(19598990-19599042)
chr1 (11-79)||(41126122-41126190)
chr1 (11-46)||(7451932-7451967)
chr1 (12-87)||(27905766-27905840)
chr1 (32-79)||(42374526-42374573)
chr1 (49-81)||(4652128-4652160)
chr1 (242-310)||(6583118-6583186)
chr1 (31-79)||(18844971-18845019)
chr1 (270-310)||(27102302-27102342)
chr1 (28-88)||(38546871-38546931)
[»] chr6 (9 HSPs)
chr6 (11-310)||(20701468-20701773)
chr6 (11-153)||(15120273-15120415)
chr6 (11-90)||(3880283-3880362)
chr6 (150-310)||(3880405-3880568)
chr6 (18-115)||(6860338-6860436)
chr6 (11-79)||(17278133-17278201)
chr6 (33-73)||(26534424-26534464)
chr6 (11-65)||(13423718-13423772)
chr6 (33-81)||(9224273-9224321)
[»] scaffold0063 (1 HSPs)
scaffold0063 (12-310)||(58238-58537)
[»] scaffold1613 (1 HSPs)
scaffold1613 (28-87)||(683-742)
[»] scaffold1384 (1 HSPs)
scaffold1384 (36-179)||(1347-1494)
[»] scaffold0119 (1 HSPs)
scaffold0119 (12-82)||(41841-41911)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 4171154 - 4170768
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 4171055  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
    ||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4171054 aaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaaccatccatcgtcactactcacccccttctaaa 4170955  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| | |||||| |||||||||||||| ||||| |||| ||||||||||||||| |||    
T  4170954 aacacccctcaaagtaaaactctcagtccttaacaccaaagctgagccacatctccaaagctcctaccc-aaagatcattaagcttccaccacctcccga 4170856  T
Q  311 atcgttttcattaattaagttcatctatttctgttaatttttatcctcaatatctaagggggaccaacattgcaggtgatccaccaaa 398  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4170855 ctcgttttcattagttaagttcatctatttctgttaatttttatcctcaatgtctaagggggaccaacattgcaggtgatccatcaaa 4170768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 457 - 590
Target Start/End: Complemental strand, 4170714 - 4170581
Alignment:
Q  457 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatacataatttttgtttacctttcttcatcctttcgtgaaaaaattaa 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  4170714 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatatgtaatttttgtttacctttcttcctcctttcgtgaaaaaattaa 4170615  T
Q  557 tatgatctaatgaagtctttggtgacaaaagtga 590  Q
    ||||||||||||||||||||||||||||||||||    
T  4170614 tatgatctaatgaagtctttggtgacaaaagtga 4170581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 50518760 - 50519047
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |  ||||||| |||||||     
T  50518760 cagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacccatgaggaccacaccca- 50518858  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
    | ||||||| | ||| ||||||||| ||||||||||||| | |  ||||||||| ||| |||||| ||| ||| |||||||||||||||| ||    |||    
T  50518859 acaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatatctaacgatccatcgtcactactcacctccaaagaaa 50518957  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 301  Q
    ||||||||| |||   ||| ||   |||||||||||||||| ||| | |||  |  ||| |||||| || |||||||||||||||||||||    
T  50518958 aacacccctaaaaaataaattcctcgtcctgaacaccaaagctgagccaca-atcaaaaactcctaaccaaaagaccattcagcttccacc 50519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 37123778 - 37123491
Alignment:
Q  13 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaa 112  Q
    ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||           |||| ||||||||||||      
T  37123778 gagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaacaccc-----------ttgaagacaacacccac-c 37123691  T
Q  113 aaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaa 210  Q
    ||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||| ||| ||||||||  |||| || | ||||||||||||| ||    |      
T  37123690 aaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatg 37123591  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    |||||||||| || | ||||||||||||| ||||| ||||| ||| | ||||| | ||||||| |  | |||||| ||| ||||||||||||||| ||||    
T  37123590 aacacccctccaaattaaactctcagtccagaacatcaaagctgagccacatc-gaaaagctcatgtctgaaagatcatacagcttccaccacctatcga 37123492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 14194340 - 14194152
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 109  Q
    |||||||| ||||||||||||| |||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||||    
T  14194340 cagagaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactca-tgaggaccacaccca 14194242  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccc 202  Q
    |  ||||||| | ||| || |||||| ||||||| ||||| ||||  |||||| || || |||||||||||||| ||||||||||||||||||    
T  14194241 c-caaaatacacgtcaccacctaaaacagactccatcacg-aaatcgccactgaat-aacgatatccaaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 14893340 - 14893260
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacat 91  Q
    ||||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  14893340 cagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaacat 14893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 25648093 - 25647888
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||| |||||||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||    ||||||| ||||||||    
T  25648093 cagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaacacacatgaggaccacacccac 25647994  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     ||| | ||   ||| ||  ||||| | ||||| ||||| |||  ||||||| | ||| |||||||||||||| ||| |||||||||||||||   ||||    
T  25647993 caaata-acatgtcaccacataaaacatactccatcacg-aaaccaccactg-aaaaacgatatccaaccatccatcatcactactcacccccaaataaa 25647897  T
Q  211 aacacccct 219  Q
    |||||||||    
T  25647896 aacacccct 25647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 33143630 - 33143813
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 117  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||  |   ||||| |||| |||| | |||     
T  33143630 cggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaacacccaaaaaactcccaagaggataacatccaccataaa- 33143727  T
Q  118 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccc 201  Q
    || | ||| || |||||| | |||||||||||||||  ||||||| | ||| |||||||||  |||||  ||||||||||||||||    
T  33143728 acacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 41039546 - 41039462
Alignment:
Q  32 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaa 116  Q
    ||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||| |  ||| |||||||||||| |||||    
T  41039546 atacaaagaaaatgcatcatatataggcggaacaccagaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaaa 41039462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 14280230 - 14280323
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 115  Q
    ||||||||| ||||||||  ||||||| ||||||||||||||||||| |||| ||||||| || |||| |||  |||||||||||||||| ||||    
T  14280230 tgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacactctgaaaatatc-ctgaggacaacacccactaaaa 14280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 32010197 - 32010121
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    |||||| ||||||  | |||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  32010197 cagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatacctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 28937400 - 28937681
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 111  Q
    |||||||||||||| ||||||||||||      ||| |||||||| |||||||||| |||||||||||||||||||||| |    | ||||||||||||     
T  28937400 agagaccggtgaaattgagaatacaaa------gcgccgtatataagcggaacacccgaaaataaacaccctaaaaacacccca-atgacaacacccacc 28937492  T
Q  112 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct-a 208  Q
    ||||       ||  || |||||| |||| ||||||||||| ||||||||||| ||| ||||||||  |||| | |||| ||||||||||| ||   | |    
T  28937493 aaaa-------tc--cacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaagtaa 28937583  T
Q  209 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    ||||||||||| |||   ||||||  || |||||||| ||||| ||| | |||||   ||||||||| || |||| | |||||||||||||||| ||||    
T  28937584 aaaacacccctaaaaaacaaactcctagacctgaacatcaaag-tgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 28937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 14879649 - 14879547
Alignment:
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    |||||||||||||||| | |||||| ||| | |||||||||||   || | ||||| | |||||||||| | |||||| |||| ||||||||||||||||    
T  14879649 aaaaacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T
Q  308 cga 310  Q
    |||    
T  14879549 cga 14879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 25594179 - 25594256
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||| ||||||  | ||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||    
T  25594179 cagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaagtaaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 48893034 - 48893128
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 115  Q
    |||||||||||||||||||||| |  | |||||||| | |||||| | ||||||||||||  |||||||| |  ||| |||||||||||| ||||    
T  48893034 tgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaaataaacactttaaaaacacccctgaagacaacacccaccaaaa 48893128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 1652569 - 1652617
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacaccc 1652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 37998891 - 37998956
Alignment:
Q  22 gaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    |||||||||||||||||||||| | | |||||||||||||||   | ||||||||||||| |||||    
T  37998891 gaaactgagaatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 46358073 - 46358129
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||| |||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 46358167 - 46358219
Alignment:
Q  101 caacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 153  Q
    ||||||||||||| ||||  |||||||| |||||| |||||||||||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaa 46358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 47946092 - 47946049
Alignment:
Q  29 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 73  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  47946092 agaatacaaacgaa-ggcgtcgtatataggcggaacacctgaaaa 47946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 14754963 - 14755010
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 67  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  14754963 gtgaaattgagaatacaaactaaaggcgccgtacataggcggaacacc 14755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 7696371 - 7696077
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||  |||||||||||| |||||||| |   |||||||||||||||    
T  7696371 cagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaaacacccccgaggacaacacccac 7696272  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     |||| ||| ||||| || |||||||| ||||||||||||||| ||||| |||| ||||||||| ||||||   ||||||||||||||| |||||  |||    
T  7696271 caaaa-tacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaa 7696173  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 306  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||| | |||||  |||| |||||| |||||||| ||||||||||||||||||||    
T  7696172 aacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 13337660 - 13337449
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgaggacaacacccac 13337561  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
       || ||| ||||  || |      ||||||| ||||||||| |||||| ||| ||| ||||||| | || | |||||||||||||||||||||  |||    
T  13337560 -ttaattacacatcgccacc------agactccctcacgaaaa-gaccacggta-aaacgatatcc-atcacccatcgtcactactcacccccttagaaa 13337471  T
Q  211 aacacccctcaaagtaaaactc 232  Q
    ||||||||||||| ||||||||    
T  13337470 aacacccctcaaaataaaactc 13337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4975155 - 4974990
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 109  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4975155 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4975056  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 176  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4975055 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4993063 - 4992898
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 109  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4993063 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4992964  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 176  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4992963 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 37770324 - 37770612
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||| |||||||  |||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||| || |||||| | |||||||    
T  37770324 cagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggataccacccac 37770419  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttcta 208  Q
      ||||| | | ||| || |||||| |||||||||||||||||  |||||| ||        |||||  |||| |  |||||||||||| |||||    |    
T  37770420 -caaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccactata--------atccaacaccacccgtcgtcactactcgcccccaaaga 37770510  T
Q  209 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 308  Q
    ||||  ||||||||| | |||||| ||| ||||||||||||||  || | || || | ||||||| || | |||||| ||||||||||||| ||||||||    
T  37770511 aaaaaccccctcaaaattaaactcacagacctgaacaccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctctc 37770610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 10173250 - 10173547
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccca 109  Q
    |||||| |||||||||  | ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| | | |  ||||||||| |||||    
T  10173250 cagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaataccca 10173349  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct 207  Q
       |||||||   |||    |||||| ||||  ||||| ||||| ||| |||||| ||| ||||| ||  ||||   |||||||||||||||||    |     
T  10173350 -tcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcaccc----ca 10173444  T
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    || || || ||||||| | |||||||||||||| |||||||||| ||| | ||||| | ||||||| ||  | ||||| |||||| ||||||||||||||    
T  10173445 aagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 12343215 - 12342992
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||||||  |||| ||||||||||||| |||| |||| || | |||||||||||| |||||||||||||||            |||||||||| |||     
T  12343215 cagagaccgacgaaattgagaatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacaccct------------gaggacaacatccat 12343128  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     |||| ||| | ||| || |||||| ||||||||||||||||| |||| ||||| ||| ||||||||||||   |||||||||||||||||||  | | |    
T  12343127 caaaa-tacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcactactcaccccc--caaga 12343031  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaa 249  Q
    |||||||||||||   |||||| ||||||| ||||||||    
T  12343030 aacacccctcaaaaataaactcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 34230610 - 34230314
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||  |||||||||| | |||||||| |  | || |||||| ||||    
T  34230610 cagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaacaccccttagaacaacatccac 34230512  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacc-cccttct 207  Q
      ||||||| | ||| ||||| ||| |||||| | |||||||| ||||||| || ||| ||||||||||  || |  |||  |||||||||| ||         
T  34230511 -caaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaaga 34230414  T
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    |||||||||| | |||  |||| | |||||||| |||||||||||||| | ||||||| ||||||| ||   |||||| |||||||||||||||||||||    
T  34230413 aaaaacacccataaaaaaaaaaat-tcagtcctaaacaccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctct 34230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 16952230 - 16952350
Alignment:
Q  185 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 284  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  16952230 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 16952326  T
Q  285 accattcagcttccaccacctctc 308  Q
    | | || |||||||||||||||||    
T  16952327 atcgtttagcttccaccacctctc 16952350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 17022895 - 17023015
Alignment:
Q  185 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 284  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17022895 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17022991  T
Q  285 accattcagcttccaccacctctc 308  Q
    | | || |||||||||||||||||    
T  17022992 atcgtttagcttccaccacctctc 17023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 17060201 - 17060321
Alignment:
Q  185 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 284  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17060201 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17060297  T
Q  285 accattcagcttccaccacctctc 308  Q
    | | || |||||||||||||||||    
T  17060298 atcgtttagcttccaccacctctc 17060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 41113412 - 41113488
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||||||||||||||||||||||||| |||| | | |||||||||||||||| | ||||||||| ||||||||||    
T  41113412 agagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 41086475 - 41086554
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    |||||||| ||||||||||| ||||||| |||| || ||||||||||||| |||||| ||||||||| ||||||||||||    
T  41086475 cagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacacccgaaaataaataccctaaaaaca 41086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 4472346 - 4472276
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| ||||||    
T  4472346 cggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 22884802 - 22884852
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 78  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22884802 gagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 33788296 - 33788362
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 77  Q
    ||||||||||||| || |||||||||||| ||||||| |||||||| |||||||||| |||||||||    
T  33788296 cagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 29139624 - 29139700
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||||||||||||| ||||||| ||||||||||||||||  | |||||||  ||||||||| ||| ||||||||    
T  29139624 agaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaaaca 29139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 29997355 - 29997265
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggac 101  Q
    ||||||||| ||||| ||| |||| |||||||||||  |||||||| |||||||| | ||||||||||| ||||||| ||||  |||||||    
T  29997355 cagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaacatcctaaaatcatccctgaggac 29997265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 33533415 - 33533500
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag------gcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||| ||||||||| || |||||||||||||||| | |||||||      ||||||||| |||||||||||||||||||||||    
T  33533415 cagagactggtgaaactaaggatacaaacaaaaggcgccatatataggcggaagcggaacacttgaaaataaacaccctaaaaaca 33533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 27740378 - 27740331
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 78  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27740378 aatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 41086664 - 41086767
Alignment:
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaa-caccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 306  Q
    |||||||||||||||| | |||||| || ||||||| | ||||||| ||   |||||   ||||||| || |||||||| ||||||||||||||||||||    
T  41086664 aaaaacacccctcaaaatcaaactcgcaatcctgaaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacctc 41086763  T
Q  307 tcga 310  Q
    ||||    
T  41086764 tcga 41086767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 42802496 - 42802427
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata---ggcggaacacctgaaaataaa 77  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||   |||||||||||  ||||||||    
T  42802496 cagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatatatacggcggaacacccaaaaataaa 42802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 25504559 - 25504629
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  25504559 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 14106368 - 14106490
Alignment:
Q  185 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 284  Q
    |||||||||||||||||||    || ||||||||||||| |||||||||||| | | |||||| ||| ||| | ||||  | ||||||| || ||||| |    
T  14106368 atcgtcactactcaccccca---aagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatg 14106464  T
Q  285 accattcagcttccaccacctctcga 310  Q
    | ||| || ||||||| |||||||||    
T  14106465 atcatacaacttccacaacctctcga 14106490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 40360652 - 40360687
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacct 68  Q
    |||||||||||| |||||||||||||||||||||||    
T  40360652 tacaaacaaaagacgtcgtatataggcggaacacct 40360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 1269861 - 1269791
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  1269861 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 1269791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 44594071 - 44594018
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    |||||||||||||||||||||||| |||||  |||| | | |||||||||||||    
T  44594071 gagaatacaaacaaaaggcgtcgtgtatagatggaatatccgaaaataaacacc 44594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 29487510 - 29487447
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaata 75  Q
    |||||||||||||  |  ||||||||| | ||||| | |||||||||||||||||||||||||||    
T  29487510 cagagaccggtgattcatagaatacaa-ctaaaggagccgtatataggcggaacacctgaaaata 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 38636905 - 38637203
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 109  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| || | |   ||||||||||||||    
T  38636905 cagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacaccca 38637003  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 209  Q
    | |||| |||   ||| || |||||| | |||||||||||||||  ||| ||||| |||||||||||||||| | |||||||||||||||||||||  ||    
T  38637004 cgaaaa-tacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaa 38637102  T
Q  210 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
    |||||||||| | | |||||||| || || ||||||||||||||||||  | || ||||||||| || | |||||| |||||||||||||||||||||||    
T  38637103 aaacaccccttatactaaaactcccaatcttgaacaccaaagttgaaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctctcg 38637202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 41117639 - 41117937
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 109  Q
    ||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  41117639 cagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacacccgaaaataaacaccctaaataacaccat-gaggacaacaccca 41117737  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 209  Q
    | |||| |||  |||| || ||| || |||||| | ||||||||  |||  |||| ||| |||||||||||| | ||||||| |||||||||| ||  ||    
T  41117738 ccaaaa-tacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaaccacccatcgtcattactcacccctttagaa 41117836  T
Q  210 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
    |||||||||||| | |||||||| |  || |||||||||||  ||| | || || ||||||||||||  ||||||| |||||||||||||||||||||||    
T  41117837 aaacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcg 41117936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 102 - 306
Target Start/End: Complemental strand, 49528390 - 49528187
Alignment:
Q  102 aacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcaccc 201  Q
    ||||||||| ||||| || | |||||| |||||||||||||||||| || |  ||||||| |  ||| ||||| |||||||| ||| |||||||||||||    
T  49528390 aacacccaccaaaaa-acacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcaccc 49528292  T
Q  202 ccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 301  Q
    ||||  |||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||| |||||||| ||| |||||||| |||||| ||||||||    
T  49528291 ccttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccacc 49528192  T
Q  302 acctc 306  Q
    |||||    
T  49528191 acctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 16832698 - 16832988
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 117  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||  ||||||||||||||||||||     |||||||||||||||| ||| |     
T  16832698 cggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaactctcctgaggacaacacccaccaaataa 16832797  T
Q  118 acgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaaca 214  Q
    |||  ||| || |||||| | | |||| |||| |||| |||| ||||| ||| ||||||||  |||| |  |||||||||||||||||     |||||||    
T  16832798 acg--tcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaaca 16832895  T
Q  215 cccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    ||||||||| | |||||| ||||| |||||||||||||||| | ||||| | ||||||| || || ||||| ||||||||||| | |||||||    
T  16832896 cccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 25753499 - 25753293
Alignment:
Q  95 tgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcac 192  Q
    |||||||||||||||| |||| |||   |||||| |||||| | ||||||||||||||| | |||||||| ||  | ||||||||  |||  ||||||||    
T  25753499 tgaggacaacacccaccaaaa-tacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  193 tactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattca 292  Q
    |||||||||||    |||||||||||||||| | ||||| ||||||||||||| ||||||||||| |||||   |||||| ||  |||||||| ||||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcattca 25753301  T
Q  293 gcttccac 300  Q
    ||||||||    
T  25753300 gcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 19814888 - 19815190
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccc 108  Q
    ||||||||| | |||| |||| ||||||| ||||||||| ||||||| || |||||||  |||||||||| | ||||| |||   |  ||||||||||||    
T  19814888 cagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacacccaaaaataaacatcataaaagacactttcaaggacaacaccc 19814987  T
Q  109 ac-aaaaaatacg-catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccccct 204  Q
    || |||||| ||| || ||  | || ||| ||||  |||||||||||||||||| ||| |||||||||||||  |||||  | ||||||||||||||||     
T  19814988 accaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcaccccca 19815087  T
Q  205 tctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacc 304  Q
       || |||||  |||||  | |||||||||||||| |||||||||||| | | ||||| | |||| ||||| |||||||| |||| ||||||||||| |    
T  19815088 ---aagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatc 19815184  T
Q  305 tctcga 310  Q
    ||||||    
T  19815185 tctcga 19815190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 22810844 - 22811128
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||| ||||||| |||||||||||||||| |||| |||||||| |||||| | | |||| |||||||||||           ||||||  |||||||    
T  22810844 cagagactggtgaaattgagaatacaaacaaa-ggcgccgtatataagcggaatatccgaaagtaaacacccta-----------gaggacctcacccac 22810931  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     |||| ||| | ||| |  |||||| ||||| ||||||||||  |||||||||| ||| ||||||| |||||| |||||||||||||||||||    |||    
T  22810932 caaaa-tacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcactactcacccccaaagaaa 22811030  T
Q  211 aacacccctcaaag-taaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 308  Q
    || ||| || |||| |||||| ||| |||||||||||||||| ||| | ||||| ||||| |||||| ||  |||||  |||| |||||||||||||||    
T  22811031 aa-acctctaaaagataaaaccctccgtcctgaacaccaaagctgagccacatccgcaaaactcctaaccagaagacatttcaacttccaccacctctc 22811128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 42719565 - 42719494
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 83  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||    
T  42719565 agagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 28967285 - 28967208
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||| ||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  28967285 cagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 48098714 - 48098645
Alignment:
Q  13 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    |||| |||||||||||| |||||||||||||| ||  |||||||||||||||||| ||||||||||||||    
T  48098714 gagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 25754272 - 25754206
Alignment:
Q  24 aactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||||| ||||||||    
T  25754272 aactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaaca 25754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 302
Target Start/End: Complemental strand, 19673377 - 19673219
Alignment:
Q  143 cttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcct 240  Q
    |||||||||||||||||||||| ||   |||||||||  ||||  ||||||||||||||||||    || ||||| ||||||| | ||||||||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcaccccca---aagaacactcctcaaaattaaactctcagtcct 19673281  T
Q  241 gaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacca 302  Q
     |||||||||||| | | ||||| | |||| || || || ||| | |||| |||||||||||    
T  19673280 caacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 2061513 - 2061580
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    ||||||||||||||||||||| |||  | |||||||||||||||| |||| ||||||||| |||||||    
T  2061513 tgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgataataaacacactaaaaa 2061580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 48098618 - 48098444
Alignment:
Q  139 actccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaa-acacccctcaaagtaaaactctca 235  Q
    |||| ||||| |||| |||||||||| ||| ||||||||  || | |  ||||||||||||||||||    |||| |||||||| |||   |||||| ||    
T  48098618 actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaatacacccctaaaaaataaactccca 48098519  T
Q  236 gtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    ||| | |||||||||||||| | ||||| | |||||||||| | |||||| | |||| |||||||||||||||||    
T  48098518 gtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcga 48098444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 46487690 - 46487621
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacac 80  Q
    |||||||||||||    |||||||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  46487690 cagagaccggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 49747937 - 49747785
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccac 110  Q
    |||||| ||||||| | || ||||||||||||| | ||||||||| |||||||| |  |||||||||||| | ||||||| |  ||||||||||||||||    
T  49747937 agagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccac 49747838  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgta 164  Q
      ||||| |   ||| || |||||| |||||| |||||||||| ||||| ||||    
T  49747837 -caaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgta 49747785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 43077355 - 43077307
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  43077355 tacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacacc 43077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 9262850 - 9262807
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag 57  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  9262850 agaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 52009234 - 52009179
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 67  Q
    ||||| ||||||||||||| || |||||| |||||| |||||||||||||||||||    
T  52009234 agagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacacc 52009179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 39420726 - 39420784
Alignment:
Q  30 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    ||||| ||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  39420726 gaatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaa 39420784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 35947987 - 35948044
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 77  Q
    ||||| ||||||||||||||||||| || | |||||| |||||||||| |||||||||    
T  35947987 gtgaatctgagaatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 20632170 - 20632233
Alignment:
Q  13 gagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaata 75  Q
    |||||||||||  | |||||||||||| ||||||||| |||||||||||||| ||| |||||||    
T  20632170 gagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccgaaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 16502091 - 16502053
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaa 71  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  16502091 tacaaacaaaaggcgctgtatataggcggaacacctgaa 16502053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 35336958 - 35336914
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 77  Q
    ||||||||||||||| ||||||||| ||||||| | |||||||||    
T  35336958 tacaaacaaaaggcgccgtatatagacggaacatccgaaaataaa 35336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 8297880 - 8297583
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||| |  |||||| |||| ||||    
T  8297880 cagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaacacccctgaggataacatccac 8297782  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcac----ccccttc 206  Q
     |||| ||| ||||| || |||||| | ||||||||| ||||| ||||| |||| ||| ||| |||||||| |||||||||||||||||    ||||       
T  8297781 caaaa-tacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaaccacctatcgtcactactcactcacccccaaa 8297683  T
Q  207 taaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 306  Q
     |||||||||||||||| | |||||| |  || |||||||||||   || | ||||| | |||||||||| ||||||||||||||| |||||||||||||    
T  8297682 gaaaaacacccctcaaaattaaactccccatcatgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 26405222 - 26405515
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |  ||||||||||| ||||  |    
T  26405222 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaaacacccctgaggacaacaaccac-ca 26405320  T
Q  114 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaaaac 213  Q
    |||||| | ||| || |||||| ||||| ||||| | |||||| ||||||  |||  |||||||| || | |||||||||||||| || |    ||||||    
T  26405321 aaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaaccatatccaatcacccatcgtcactactca-cctcaaagaaaaac 26405418  T
Q  214 acccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    || | ||||| | ||||||   ||||||||||||||||| || | || || | ||||||| || ||||||||||| |||||||||||||||||||||    
T  26405419 actcatcaaaattaaactcctcgtcctgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcga 26405515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 26045634 - 26045924
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacaccca 109  Q
    ||||||||||||||  |||| |||||||||||||||| ||||||||| ||||||| |  ||||||||||||||||||| |  |  |||||||||||||||    
T  26045634 cagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacaccca 26045733  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttct 207  Q
    | |||| | | | ||| || |||||| ||||| ||||| |||||||||||| ||| ||| || |||||||  |  | ||||||||||||||||||         
T  26045734 ccaaaatt-cacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaag- 26045831  T
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccac 300  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||||   || || | ||||||| || | |||||| || |||||||||||    
T  26045832 aaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 7682960 - 7682770
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 113  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||| ||||| ||||| |    |||| |||||||||||  |    
T  7682960 agacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatacttatgagaacaacacccac-ca 7682862  T
Q  114 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa--tgatatccaaccatctatcgtcactactcaccccc 203  Q
    |||||| ||||| || ||||||||||||| ||||| |||| |||||| ||| |||  | || ||  |||||| |||||||||||||| ||||    
T  7682861 aaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaacccc 7682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 30097725 - 30097601
Alignment:
Q  29 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacccta-aaaacatcattgaggacaacacccacaaaaaatacgcatcatc 127  Q
    ||||||||||| |||| || ||||||||||||||||||| |||||||||||||||| ||||||||  ||| ||||||||||||  ||||||| | ||| |    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccac-caaaatacacgtcacc 30097627  T
Q  128 atctaaaatagactccttcacgaaaa 153  Q
    | |||||| |||||||||||||||||    
T  30097626 acctaaaacagactccttcacgaaaa 30097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 25992411 - 25992332
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||    
T  25992411 cagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgacaataaacaccctaaaaaca 25992332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 10175089 - 10174921
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||  |||||||| ||||||||| |||||||||| |   |||||||||||||||    
T  10175089 cagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctg-aaataaacatcctaaaaacacctccgaggacaacacccac 10174991  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaacca 181  Q
      ||| ||| | | | || |||||| ||||||||||   |||| |||||| ||| ||| ||||||||||||    
T  10174990 -caaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaacca 10174921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 14302124 - 14302356
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatac 119  Q
    |||||| ||| |||| |||||| || || |||||||||  ||||||||  |||||||| | |||||||||| |  ||| ||||||||||||  |||||||    
T  14302124 gtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaacacccctgatgacaacacccac-caaaatac 14302222  T
Q  120 gcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacaccc 217  Q
     | ||| || |||||| ||| |||||| |||||| ||||| |||| ||| ||||||||  |||| || ||||||||||||| ||||    ||||| ||||    
T  14302223 acgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T
Q  218 ctcaaagtaaaactctcagtcctgaacaccaaag 251  Q
    |||||| | |||||| || |||||||||||||||    
T  14302323 ctcaaaattaaactcccactcctgaacaccaaag 14302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 13953928 - 13953996
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13953928 gtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 7195109 - 7195210
Alignment:
Q  208 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 307  Q
    ||||||| |||||||| |||||||| |||||||||| ||||||| ||| | ||||| |||||||||||| || |||||  ||||||||||||| ||||||    
T  7195109 aaaaacaaccctcaaaataaaactc-cagtcctgaataccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctct 7195207  T
Q  308 cga 310  Q
    |||    
T  7195208 cga 7195210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 33109881 - 33110035
Alignment:
Q  19 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaata 118  Q
    |||||||||||||||||||||||||| ||  |||||  | || |||||| ||||||||||||  |||||||| | |  | |||||||||||| |||| ||    
T  33109881 ggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacacccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaa-ta 33109975  T
Q  119 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa 178  Q
    | | |||||| |||||| | || |||||||||||| |||||||||| ||| |||||||||    
T  33109976 cacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaa 33110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 7194982 - 7195113
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 120  Q
    |||||||||||||| | |||||| | ||||| |||| |||||||| |  ||||||||||||||||||||| |  || |||||||||||||  |||||||     
T  7194982 tgaaactgagaatatagacaaaatgagtcgtttatatgcggaacatccaaaaataaacaccctaaaaacaccgctgcggacaacacccac-caaaataca 7195080  T
Q  121 catcatcatctaaaatagactccttcacgaaaa 153  Q
    | ||| || |||||| |||||||||||| ||||    
T  7195081 cgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 33258560 - 33258641
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatc 92  Q
    ||||||||||||||| ||  |||||||| |||||||| |||||||| | | |||||| ||||||||||||| ||||||||||    
T  33258560 cagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaacatc 33258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 5187355 - 5187276
Alignment:
Q  8 gagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||||||| |||||||| ||||||||||||||||||||| || ||||||  | | |||| ||||||||||||| |||||    
T  5187355 gagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccataaaa 5187276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 27713481 - 27713421
Alignment:
Q  13 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 73  Q
    |||||| ||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||    
T  27713481 gagaccagtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 31742552 - 31742504
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31742552 tacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 8731348 - 8731278
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  8731348 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 23426716 - 23426646
Alignment:
Q  5 gaggagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaata 75  Q
    ||||| |||||||||||||  | ||||||||||  |||||| | ||||||||||||||||||| |||||||    
T  23426716 gaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacacccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 37108170 - 37108105
Alignment:
Q  50 gtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 115  Q
    |||||||||||||||| |  ||||||||||||||||||||| |  |||||| ||||||||| ||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaaacacccatgaggataacacccaccaaaa 37108105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 24071952 - 24072000
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 79  Q
    ||||||||| || |||| ||||||||||||||||||| |||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 7391668 - 7391766
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaaca--aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacc 107  Q
    ||||||||||||||| ||||||||||||    ||| | |  |||||||||||||| |||||||| || ||| |||||||||| |  |||||||||||||    
T  7391668 cagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaacctgaaagtacacaacctaaaaacacccatgaggacaacacc 7391766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 4914177 - 4914247
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||||||||||||||| ||  ||||| |||||||||| |||||||| | || ||||||| | |||||||    
T  4914177 cggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacatccgataataaaccctctaaaaa 4914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 34345831 - 34345860
Alignment:
Q  39 caaaaggcgtcgtatataggcggaacacct 68  Q
    ||||||||||||||||||||||||||||||    
T  34345831 caaaaggcgtcgtatataggcggaacacct 34345860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 25657808 - 25657867
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||| ||||||| | ||||| ||||||||||| |||||||| |||||||||||| ||||||    
T  25657808 gagattacaaactacaggcgccgtatataggcagaacacct-aaaataaacaccataaaaa 25657867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 24324470 - 24324767
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 111  Q
    ||||| || ||||| |||||||||||||||||  |||| |||||||  | |||||| |||||||||||| ||||||||| | ||||||||||||| |||     
T  24324470 agagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacacccgaaaataaacactctaaaaacacccttgaggacaacactcacc 24324569  T
Q  112 aaaaatacgcatcatcatctaaaatagactccttcacgaaaat-gaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
    |||| ||| | ||| ||  ||||| |||||||||||||||||  ||||| ||||  || |||||||||||| | ||||||||||||||||||     |||    
T  24324570 aaaa-tacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaaccacc-atcgtcactactcacccctaaagaaa 24324667  T
Q  211 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||| | ||| | | |||||||||| |||||||| |||||||||||||||||| |||||    
T  24324668 aacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccctcga 24324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 42532930 - 42533035
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  | |||| ||||||||||||    
T  42532930 cagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaactcccttgatgacaacacccac 42533029  T
Q  111 aaaaaa 116  Q
    ||||||    
T  42533030 aaaaaa 42533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 16828774 - 16828894
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 113  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||| | |  ||| || |||| ||||  |    
T  16828774 agaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaaatacccctgaagaaaacaaccac-ca 16828872  T
Q  114 aaatacgcatcatcatctaaaa 135  Q
    |||||| |||||||||||||||    
T  16828873 aaatacacatcatcatctaaaa 16828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 33719375 - 33719183
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 109  Q
    |||||| ||||||||||||||||||||||||| ||||  | |||||||||||||| | |||| ||||||||||||||||| ||| |||||||||||||||    
T  33719375 cagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaagtaaacaccctaaaaacactca-tgaggacaacaccca 33719278  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcac-gaaaatgaccactgtataaatgatatccaac-catct-atcgtcactactcacccc 202  Q
    |  |||||||  |||| |  ||||||  |||||||||||  |||| |||| ||||| |||||||||||||| |  || ||||||||||||||||||    
T  33719277 c-caaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 8745388 - 8745264
Alignment:
Q  186 tcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaaga 285  Q
    ||||||||||||||||||    |||||||||||||||| | |||||| ||||| |||||||||||| ||| | ||||| | |||||||||| | ||||||    
T  8745388 tcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaaga 8745289  T
Q  286 ccattcagcttccaccacctctcga 310  Q
     ||| |||||||||| |||||||||    
T  8745288 tcatgcagcttccacaacctctcga 8745264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 16954895 - 16954795
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 113  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||||||||| | |||||||||||| ||||||||| |  ||| || |||| |||||||    
T  16954895 agaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaaacacccctgaagaaaacaaccacaaa 16954797  T
Q  114 aa 115  Q
    ||    
T  16954796 aa 16954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 39013643 - 39013558
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaaca 105  Q
    |||||||||||||||||||||| || ||| |||||||| ||||| |||| |||||||||||||| |||||| |  |||||||||||    
T  39013643 gtgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacaccctgaaaacaactatgaggacaaca 39013558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 6726090 - 6726146
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 67  Q
    |||||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  6726090 cagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacacc 6726146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 48058343 - 48058399
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 67  Q
    |||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  48058343 cagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacacc 48058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 1321192 - 1321011
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 120  Q
    ||||||||||||||||||||  | ||  |||||||||||||||| || |||||||||||||||||||||  | |||| |||| || ||||  |||||||     
T  1321192 tgaaactgagaatacaaacacgacgc--cgtatataggcggaactcccgaaaataaacaccctaaaaac-cccttgaagacaccatccac-caaaataca 1321097  T
Q  121 catcatcatctaaaatagactcc-ttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 203  Q
    ||||| || |||||| |||| || |||||||||   ||||||||| ||| |||||| |  ||||   |||||||||||||||||||    
T  1321096 catcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 6716417 - 6716484
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||| |||||||||||  ||||| | ||||||||  ||||||||||||||||||||||||||||||    
T  6716417 tgaaacagagaatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaa 6716484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36674880 - 36674809
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    |||||| |||||||| ||   |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  36674880 cagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 44755968 - 44755906
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 83  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  44755968 gtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaacacct-aaaataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 3478729 - 3478683
Alignment:
Q  41 aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 28534175 - 28534240
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 76  Q
    |||||||||||||    ||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  28534175 cagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 8745539 - 8745469
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    ||||||| ||||||||||| |||| |||||| || || ||||||||||||||||||| ||||| ||||||||    
T  8745539 cagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacacccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 22567781 - 22567818
Alignment:
Q  29 agaatacaaacaaaaggcgtcgtatataggcggaacac 66  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 34390206 - 34390075
Alignment:
Q  176 caaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcct 275  Q
    |||||| | |||||||||||||| ||||    || ||||||||||||| |||||||| ||| |   |||||| ||||||| | |||| || |||||||||    
T  34390206 caaccacccatcgtcactactcatcccca---aagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcct 34390110  T
Q  276 acccgaaagaccattcagcttccaccacctctcga 310  Q
    |  |||| || ||| |||||||||| |||||||||    
T  34390109 aatcgaatgaacatgcagcttccacaacctctcga 34390075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 47456744 - 47456800
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 67  Q
    |||||||||||||||| || ||||||||  |||||||  ||||||||||||||||||    
T  47456744 cagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 6716535 - 6716707
Alignment:
Q  139 actccttcacgaaaatgaccactgtataaatgatatc-ca-accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcag 236  Q
    ||||||||||||||| |||||||||| ||| | |||| || |||| | || ||||||||||||||||  |   ||||||||| |||| | |||||| ||     
T  6716535 actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaac--gaaacaccccacaaaattaaactcccat 6716632  T
Q  237 tcctgaacaccaaagttgaactacatctgcaaagctcctacccg-aaagaccattcagcttccaccacctctcga 310  Q
    |||| |||||||||| ||| | ||||| | |||  || || ||| ||||| || |||||||||||||||||||||    
T  6716633 tcctcaacaccaaagctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctctcga 6716707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 78  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 37117 - 36820
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 109  Q
    ||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| | ||||||||||||| | ||||||| |  ||||||| |||||||    
T  37117 cagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacaccca 37018  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 209  Q
     | ||||||| | ||| || |||||| ||||||||||||| |||  ||||||||| ||| || ||||||||||| | |||||||||||||||||    ||    
T  37017 -acaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaaccatccaccgtcactactcacccccaaagaa 36920  T
Q  210 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
    |||||||||| |||  | ||| | | |||||||||||||||| ||| | |||   | |||||||||| ||||||||||||||| |||||||||| |||||    
T  36919 aaacacccct-aaaaaataaccccccgtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccacatctcg 36821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 17656408 - 17656575
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 111  Q
    |||||||||||||| |||  ||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | |||||||||||||||||     
T  17656408 agagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaacacccttgaggacaacacccac- 17656506  T
Q  112 aaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatccaac 179  Q
     ||||| | | ||| ||||||||| ||||||||||| | |||| |||||||| | ||| ||||||||||    
T  17656507 caaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaac 17656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 10248246 - 10248482
Alignment:
Q  21 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaata 118  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||||||| | ||||||| | ||||||||||||||| |  ||||||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgc-caaaata 10248344  T
Q  119 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttcta-aaaacac 215  Q
    | | ||| || |||||| | ||||||||||||||| |||||||||| ||| || |||| ||  || | |||||||||||||||||||  | |  ||||||    
T  10248345 cacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccc--caacgaaacac 10248442  T
Q  216 ccctcaaagtaaaactctcagtcctgaacaccaaagttga 255  Q
    || ||||| | ||||||| |||||| ||||||||||||||    
T  10248443 ccgtcaaaattaaactctaagtcctcaacaccaaagttga 10248482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 12197747 - 12197822
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12197747 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 12442175 - 12442250
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12442175 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12442250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 17656872 - 17656972
Alignment:
Q  210 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
    |||||||||||||| | |||||| || || |||||||||||||||| | || |||| ||||||||||   |||||| ||||||||||||||||||| |||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcg 17656971  T
Q  310 a 310  Q
    |    
T  17656972 a 17656972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 2273760 - 2273799
Alignment:
Q  49 cgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  2273760 cgtataaaagcggaacacctgaaaataaacaccctaaaaa 2273799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 8862308 - 8862370
Alignment:
Q  27 tgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 88  Q
    ||||| ||||||||||||||| ||||||||| ||||||| ||  |||||||||||| ||||||    
T  8862308 tgagagtacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaa 8862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 9831691 - 9831741
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 78  Q
    |||||||||||| |||| |||||||||||||| || |||| ||||||||||    
T  9831691 gagaatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 34775267 - 34775129
Alignment:
Q  26 ctgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaatacgcatc 124  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| | ||||| | || ||||||||||||||||  ||||||| | ||    
T  34775267 ctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccac-caaaatacacgtc 34775169  T
Q  125 atcatctaaaatagactccttcacgaaaatgaccactgta 164  Q
    |||| |||||| ||||||||||||||||| ||| ||||||    
T  34775168 atcacctaaaacagactccttcacgaaaacgacaactgta 34775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 27102589 - 27102489
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 113  Q
    |||| |||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||    
T  27102589 agactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggacaacacccaccaa 27102491  T
Q  114 aa 115  Q
    ||    
T  27102490 aa 27102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 31290692 - 31290989
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    ||||||| ||||| ||||||||||||||||| ||||    ||| ||| ||||||||| ||||||||||||| |||||||| |  |||||||||  |||      
T  31290692 cagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaacaccataaaaacacccctgaggacaattccctt 31290791  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     | |  ||| ||||| || |||||  |||||||||| |||||| |||||||||| |||||||| ||||||||| ||||||||||||||||| |    |||    
T  31290792 cata--tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaaccatccatcgtcactactcaccctcaaagaaa 31290889  T
Q  211 aacacccct-caaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
    |||||||||  ||| ||||   |||| ||  ||||||||||| ||| | ||||| | |||||||||| |||||||| ||  || ||||||||||||||||    
T  31290890 aacacccctaaaaaataaacggctca-tctagaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcg 31290988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 9313011 - 9313090
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9313011 cagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaaca 9313090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 32882757 - 32882583
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatacgcatcatcat 129  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||| |   |||||||||||||||  ||||||  ||||| |      
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccac-caaaatatacatcaccgc 32882659  T
Q  130 ctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 203  Q
    ||||||  |||||||||||||||| || ||||||| | | ||||||||  |||| | |||||||||||||||||||    
T  32882658 ctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 46768579 - 46768437
Alignment:
Q  19 ggtgaaactgagaatacaaacaaaaggcgtc-gtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccacaaaaaa 116  Q
    ||||||| |||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||| || |   ||||||||||||||| ||||     
T  46768579 ggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaat 46768480  T
Q  117 tacgcatcatcatctaaaatagactccttcacgaaaatgaccac 160  Q
    | | | ||| || |||||| ||||||||||||||||| ||||||    
T  46768479 t-cacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11439698 - 11439919
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 117  Q
    |||||||| ||||||||||||||||||||| | ||||||| ||||||| | ||||||||||||||||||| |  |  ||| ||||||| ||||  |||||    
T  11439698 cggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacatccgaaaataaacaccctaaaatc-cccctgaagacaacatccac-caaaat 11439795  T
Q  118 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactact-cacccccttctaaaaaca 214  Q
    || | ||| || |||||| |||  |||||||||||   ||||| ||| ||||||||||||  ||||  ||||||||||||| |||||||    |||||||    
T  11439796 acacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaaca 11439895  T
Q  215 cccctcaaagtaaaactctcagtc 238  Q
    ||||||| | | |||||| |||||    
T  11439896 cccctcagaattaaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 4431084 - 4431006
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggc-ggaacacctgaaaataaacaccctaaaaaca 90  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| ||||| |||||||||||||||    
T  4431084 agagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaacacctaaaaat-aacaccctaaaaaca 4431006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 10785133 - 10785359
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccac 110  Q
    |||||| ||| ||||||||||||||||| |||  || |||| | || |||||||||  || ||||||||| |||||| || | ||||||||||||||||     
T  10785133 agagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccat 10785232  T
Q  111 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 210  Q
     |||| |||   | ||||  ||||| ||||||||||||||||| |||  ||| | ||| |||||||||||| | |||||||||||||| |||   | | |    
T  10785233 caaaa-tacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaaccacccatcgtcactactcatccc--gcaaga 10785329  T
Q  211 aacacccctcaaagtaaaactctcagtcct 240  Q
    |||||||||||||   ||||||||||||||    
T  10785330 aacacccctcaaaaataaactctcagtcct 10785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32863225 - 32863287
Alignment:
Q  19 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    ||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  32863225 ggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 376477 - 376549
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 83  Q
    ||||||| | |||||| |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  376477 cagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 41126348 - 41126443
Alignment:
Q  213 cacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 308  Q
    |||||||| || | |||||||||||||| | |||||||||||| | ||||||| |||||||||| || ||||| | ||||||||||| ||||||||    
T  41126348 cacccctctaaatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctc 41126443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 16577560 - 16577374
Alignment:
Q  121 catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacacccc 218  Q
    |||||||| |||||| |||||| |||||||||| |||||||  | ||||||||||||  |||||  |||||| |||||||| ||     || ||||||||    
T  16577560 catcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaa---aagaacacccc 16577464  T
Q  219 tcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 308  Q
    || ||   ||||| ||||||   | |||||||||||| | ||||| | ||||||||||  | ||||| ||||||||||||||||||||||    
T  16577463 tctaaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctc 16577374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 37200552 - 37200485
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 78  Q
    ||||||||||||| || |||||||||||| |||| | |||||||||||||||||| | ||||||||||    
T  37200552 cagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 52278682 - 52278589
Alignment:
Q  20 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 115  Q
    ||||||| |||||||||| | || |||| | ||||||||||||||||||||||||||||||| |||| ||| ||  ||||||||||||||| ||||    
T  52278682 gtgaaacagagaatacaagctaa-ggcgccatatataggcggaacacctgaaaataaacaccttaaagacacca-cgaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 17034001 - 17033939
Alignment:
Q  14 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 76  Q
    ||||||||||  | || |||||||||||||||||||||||||| |||||||||| ||||||||    
T  17034001 agaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 9557317 - 9557241
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    |||||||||||||| ||||||||||||| ||||  | |||||||||  || |||||| ||||||||||||| |||||    
T  9557317 cagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 38544404 - 38544463
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  38544404 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 16149155 - 16149093
Alignment:
Q  42 aaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaa 103  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaa 16149093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 46603751 - 46603705
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 77  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 50588964 - 50589014
Alignment:
Q  32 atacaaacaaaaggcgtcgtatataggcggaacacctgaa-aataaacacc 81  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  50588964 atacaaacgaaaggcgccgtatataggcggaacacctgaagaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 49820565 - 49820488
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 88  Q
    ||||| ||||||| | |||||||||||| |||| |||| ||| ||||||||||| || ||||||||||||| ||||||    
T  49820565 agagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacccggaaaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 19599042 - 19598990
Alignment:
Q  30 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa-taaacacc 81  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| ||||||||    
T  19599042 gaatacaataaaaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 41126122 - 41126190
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 79  Q
    ||||||||| |||  | |||||||||||| |||||| |||||||||||  ||||||| |||||||||||    
T  41126122 cagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 7451932 - 7451967
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggc 46  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7451932 cagagaccggtgaaactgagaatacaaacaagaggc 7451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 27905840 - 27905766
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    ||||||||||||| | |||| ||||||| | |||||||||||||||| |||||| |  |||||||||||| |||||    
T  27905840 agagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaacaccataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  32 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 79  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 4652160 - 4652128
Alignment:
Q  49 cgtatataggcggaacacctgaaaataaacacc 81  Q
    ||||||||||||||||||||||||| |||||||    
T  4652160 cgtatataggcggaacacctgaaaacaaacacc 4652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 6583118 - 6583186
Alignment:
Q  242 aacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    |||||||||| ||| |  |||| | |||||||||| | |||||| || |||||||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcga 6583186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 18844971 - 18845019
Alignment:
Q  31 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 79  Q
    ||||||||||||||||||||| ||||| ||||| | | |||||||||||    
T  18844971 aatacaaacaaaaggcgtcgtgtatagacggaatatccgaaaataaaca 18845019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 27102342 - 27102302
Alignment:
Q  270 gctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    ||||||| | |||||| ||||||||||||||||||||||||    
T  27102342 gctcctatctgaaagatcattcagcttccaccacctctcga 27102302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 38546871 - 38546931
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 88  Q
    |||| ||||||| ||| | ||||||||||||||||||| | ||||||||| ||| ||||||    
T  38546871 gagagtacaaactaaatgtgtcgtatataggcggaacatccgaaaataaaaaccataaaaa 38546931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 20701468 - 20701773
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 110  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| || |||||| |   ||||||||||||||     
T  20701468 cagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctggaaataaacacact-aaaacacccacgaggacaacacccat 20701566  T
Q  111 aaaa----aatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc- 203  Q
     |||    || || | ||| || ||| || |||| | |||||||||   ||||||||| ||| ||||||||  || | | |||||||||||||||||||     
T  20701567 caaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcaccccca 20701666  T
Q  204 ttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccac 303  Q
        |||||||||| | |||   ||||||  |||| |||||| ||||||||| | ||||  | |||||||||| |||||||| |||||||||||||| ||    
T  20701667 aaaaaaaaacaccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactac 20701766  T
Q  304 ctctcga 310  Q
    |||||||    
T  20701767 ctctcga 20701773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 15120273 - 15120415
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 109  Q
    ||||||||||| ||||||||||||||||| |||| || ||||| ||||| ||||| |||| |||||||||||| |||||||||  ||||||||||| |||    
T  15120273 cagagaccggtaaaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatcca 15120372  T
Q  110 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 153  Q
    |  ||||||| ||||| || |||||| |||||| ||||| ||||    
T  15120373 c-caaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 3880283 - 3880362
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 90  Q
    ||||||||||||||||||| |||||||||||||||   |||||||| ||||||||||  |||||||||||||||||||||    
T  3880283 cagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaacaccctaaaaaca 3880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 310
Target Start/End: Original strand, 3880405 - 3880568
Alignment:
Q  150 aaaatgaccactgtataaatgatatccaac--catctatcgtcactactcaccccct-tctaaaaacacccctcaaagtaaaactctcagtcctgaacac 246  Q
    |||| ||||||| || ||| ||||||||||  ||||| |||||||||||||||||||    |||||||||||||||| | ||||||  |||| |||||||    
T  3880405 aaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacac 3880504  T
Q  247 caaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 310  Q
    ||||| ||| | |||||   ||||||| || ||||||||  ||||| ||||||||||| |||||    
T  3880505 caaagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccaccactcga 3880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 6860436 - 6860338
Alignment:
Q  18 cggtgaaactgagaatacaaacaaaaggcgtcgtatata--ggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 115  Q
    |||||||||| |||||||||||||||| || ||||||||  |||||||||||  ||||||||||||||||||||| |  || ||||||| ||||||||||    
T  6860436 cggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaacacctatgcggacaac-cccacaaaaa 6860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 17278133 - 17278201
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 79  Q
    |||||||||||||  | |||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  17278133 cagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 13423772 - 13423718
Alignment:
Q  11 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 65  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||||||||||||    
T  13423772 cagagacctttgaaactgagaatacaatctaaaggcgtcgtatataggcggaaca 13423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 9224321 - 9224273
Alignment:
Q  33 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 81  Q
    ||||| ||||||| |||||||||||  |||||||| |||||||||||||    
T  9224321 tacaaccaaaaggtgtcgtatatagaaggaacacccgaaaataaacacc 9224273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 58537 - 58238
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 111  Q
    ||||||||||||||| || |||| |||||||||||| ||||||||||  |||||||  |||||||| |||||||||||| |  |||| ||| ||  ||      
T  58537 agagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacacccatgagaacacca-tcagc 58439  T
Q  112 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaa 209  Q
     ||| ||| ||||| || | |||| ||||||||||||||||| ||||| |||| || |||||||||  || | |  |||||||||||||| |||    ||    
T  58438 caaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T
Q  210 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 309  Q
     ||||| ||||||| | ||||||||||||| ||||||||||| ||| | ||||  | ||||||| || ||||||||  |||||||||||| || ||||||    
T  58338 caacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcg 58239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 683 - 742
Alignment:
Q  28 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 87  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  683 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 1347 - 1494
Alignment:
Q  36 aaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccct-aaaaacatcattgaggacaac---acccacaaaaaatacgcatcatcatc 130  Q
    |||||||||||| ||||||||||| ||||||| | |||||||||||| | ||||||| |  | ||||||||   |||||| |||||||| | ||| || |    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccac-aaaaatacacgtcaccacc 1445  T
Q  131 taaaatagactccttcacgaaaatgaccactgtataaatgatatccaac 179  Q
    |||||  ||||||| ||||| ||  ||||||||| ||| ||||||||||    
T  1446 taaaactgactcctacacgagaacaaccactgtaaaaacgatatccaac 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 41841 - 41911
Alignment:
Q  12 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 82  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  41841 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 41911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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