View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_70 (Length: 315)
Name: NF2479_low_70
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 26622168 - 26622466
Alignment:
| Q |
1 |
atagtctcataatttggttactaaaggacaagagtggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttatgtatgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26622168 |
atagtctcataatttggttactaaaggacaagagtggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttatgtatgtg |
26622267 |
T |
|
| Q |
101 |
ggactatatgattaagagtagtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatccaccagt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26622268 |
ggactatatgattaagagtcgtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatccacctgt |
26622367 |
T |
|
| Q |
201 |
tgctattaattactatagtaggttgcatgtatctactatatgaagaatcaagaatcgttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26622368 |
tgctattaattactatagtaggttgcatgtatctactatatgaagaatcaagaatcgttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
26622466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 26619733 - 26619995
Alignment:
| Q |
2 |
tagtctcataatttggttactaaaggacaagagtggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttat-gtatgtg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26619733 |
tagtctcataatttggttattaaaggacaagagtggggtggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttattgtatgta |
26619832 |
T |
|
| Q |
101 |
ggactatatgatt-------aagagtagtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatc |
193 |
Q |
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|| || |||||| | |||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26619833 |
gggttacatgattctaacttatgagtag-cactttggttgagtaattgattaggagaatgtccaaactctatgcacacgaggggtttccatggttggatc |
26619931 |
T |
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| Q |
194 |
caccagttgctattaattactatagtaggttgcatgtatctactatat-gaagaatcaagaatc |
256 |
Q |
| |
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|||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| |
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| T |
26619932 |
cacctgttgctattaattactataggaggttgtatgtatctactatataaaagaatcaagaatc |
26619995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 26640095 - 26640357
Alignment:
| Q |
3 |
agtctcataatttggttactaaaggacaagag--tggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttatgtatgtg |
100 |
Q |
| |
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|||||||||| |||||| ||||||||||| || ||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||||| || ||| || |
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| T |
26640095 |
agtctcataaattggttgctaaaggacaatagactggattgcttctcaattctcacccatgaaaatttg---gttctgtcaattgaatttaat-tatatg |
26640190 |
T |
|
| Q |
101 |
ggac----tatatgattaagagtagtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatccac |
196 |
Q |
| |
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|| | |||||||||| |||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26640191 |
gggctatatatatgattatgagtggtcacttttgttga-ttattgattaggagaatgtccaaactccatgcacacgaggggtatccatggttggatccaa |
26640289 |
T |
|
| Q |
197 |
cagttgctattaattac---tatagtaggttgcatgtatctactatatgaagaatcaagaatcgttgtcat |
264 |
Q |
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| |||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
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| T |
26640290 |
ctgttgatattaattactaatatagtaggttgcatgtatcta-tatat--agaatcaagaatcattgtcat |
26640357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 26652745 - 26652475
Alignment:
| Q |
1 |
atagtctcataatttggttactaaaggacaagag--tggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttat-gtat |
97 |
Q |
| |
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|||||||||||| |||||| ||||||||||| || ||||||||||||||||| ||| |||||||| |||| |||||||||| ||||||||| || |||| |
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| T |
26652745 |
atagtctcataaattggttgctaaaggacaaaagactggattggttctcaattctcacccatgaaattttg-gtgttctgtcaattgaatttaattgtat |
26652647 |
T |
|
| Q |
98 |
g-tgggac---tatatgattaagagtagtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatc |
193 |
Q |
| |
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| || | |||||||||| |||| |||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652646 |
ggtgctatatgtatatgattatgagtggtcactttggttgatta-ttgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatc |
26652548 |
T |
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| Q |
194 |
caccagttgctattaattactatag-----taggttgcatgtatctactatatgaagaatcaagaatcgttgtcat |
264 |
Q |
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|| | |||| |||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
26652547 |
caactgttgatattaattactagagatatataggttgcatgtatcta-tatat--agaatcaagaatcgttgtcat |
26652475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 26616696 - 26616955
Alignment:
| Q |
1 |
atagtctcataatttggttactaaaggacaagag--tggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttat-gtat |
97 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| || ||||||||||||||||| ||| ||||||||| || |||||||||| ||||||||| || |||| |
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| T |
26616696 |
atagtctcataaattggttgctaaaggacaatagactggattggttctcaattctcacccatgaaaagtttggtgttctgtcaattgaatttaattgtat |
26616795 |
T |
|
| Q |
98 |
gtgggactatat--gattaagagtagtcacttttgtagagtaattgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatcca |
195 |
Q |
| |
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| || ||||| ||||| |||| |||||||| || || || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
26616796 |
ggggctatatatatgattatgagtggtcactttggttgatta-ttgattaggagaatgtccaaactccatgcacacgaggggttttcatggctggatcca |
26616894 |
T |
|
| Q |
196 |
ccagttgctattaattac---tatagtaggttgcatgtatctactatatgaagaatcaagaatc |
256 |
Q |
| |
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| |||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
26616895 |
actgttgatattaattactaatatagtaggttgcatgtatcta-tatat--agaatcaagaatc |
26616955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 26609649 - 26609718
Alignment:
| Q |
139 |
ttgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatccaccagttgctatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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|
| T |
26609649 |
ttgattaggagaatgtccaaactccatgcacacgaggggtttccatggttggatccaactgttgatatta |
26609718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 26632167 - 26632217
Alignment:
| Q |
145 |
aggagaatgtccaaactccatgcacacgaggggtttccatggttggatcca |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26632167 |
aggagaatgtccaaactccatgcacacgaggggtttccatggctggatcca |
26632217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 26609825 - 26609866
Alignment:
| Q |
258 |
ttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26609825 |
ttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
26609866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 26652417 - 26652376
Alignment:
| Q |
258 |
ttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652417 |
ttgtcatggtccagaagaaagttcattcgaaggtagggaagg |
26652376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 26617023 - 26617060
Alignment:
| Q |
259 |
tgtcatggtccagaagaaagttcattcgaaggtaggga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
26617023 |
tgtcatggtccagaagaaagttcattcgaaggtaggga |
26617060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 26640417 - 26640457
Alignment:
| Q |
259 |
tgtcatggtccagaagaaagttcattcgaaggtagggaagg |
299 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
26640417 |
tgtcatggtccagaagaaagatcattccaaggtagggaagg |
26640457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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