View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_79 (Length: 295)
Name: NF2479_low_79
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 43895614 - 43895332
Alignment:
| Q |
1 |
ttgatcttcctgatatgatctcttctgcacctcaatatccaggtaattagtctattttttgggtcactaccattttggaacctaatttgaaaaaataaag |
100 |
Q |
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| T |
43895614 |
ttgatcttcctgatatgatctcttctgcacctcaatatccaggtaattagtctattttttgggtcaccaccattttggaacctaatttgaaaaaataaag |
43895515 |
T |
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| Q |
101 |
ttagattgacaaatattagtggaccgaccatccttnnnnnnnntattagtggacc--gaccatgttagtattttggtttgtccacggactaattttatta |
198 |
Q |
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| T |
43895514 |
ttagattgacaaatattagtggaccgaccatccttaaaaaaaatattagtggaccgagaccatgttagttttttggtttgtccacggactaattttatta |
43895415 |
T |
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| Q |
199 |
aattttagaatatgccgtattagtttacgaacatatttattcaatttatttaacttttgtggcatgtatataggtataacaca |
281 |
Q |
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| T |
43895414 |
aattttagaatatgctgtattagtttacaaacatatttattcaatttatttaacttttgtggcatgtatataggtataacaca |
43895332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 43907030 - 43906991
Alignment:
| Q |
82 |
ctaatttgaaaaaataaagttagattgacaaatattagtg |
121 |
Q |
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| T |
43907030 |
ctaatttgaaaaaatagagttagattgacaaatattagtg |
43906991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 43906720 - 43906676
Alignment:
| Q |
215 |
gtattagtttacgaacatatttattcaatttatttaacttttgtg |
259 |
Q |
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| T |
43906720 |
gtattagtttacaaacaaatttattcaatttatttaactcttgtg |
43906676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43907118 - 43907073
Alignment:
| Q |
1 |
ttgatcttcctgatatgatctcttctgcacctcaatatccaggtaa |
46 |
Q |
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| T |
43907118 |
ttgatcttcctgatatgatatcttctgcccctcaattgccaggtaa |
43907073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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