View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_8 (Length: 589)

Name: NF2479_low_8
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_8
NF2479_low_8
[»] chr3 (9 HSPs)
chr3 (17-577)||(4132753-4133325)
chr3 (46-319)||(4057518-4057788)
chr3 (46-380)||(4104539-4104870)
chr3 (46-235)||(4077210-4077399)
chr3 (122-319)||(4089272-4089466)
chr3 (126-208)||(2922128-2922210)
chr3 (126-208)||(11488775-11488857)
chr3 (126-319)||(5968415-5968605)
chr3 (281-373)||(11494855-11494947)
[»] chr1 (2 HSPs)
chr1 (46-235)||(13936274-13936460)
chr1 (264-319)||(17314492-17314547)
[»] chr8 (1 HSPs)
chr8 (126-319)||(18390651-18390841)
[»] chr4 (2 HSPs)
chr4 (275-319)||(5991269-5991313)
chr4 (126-206)||(5991123-5991203)
[»] chr5 (2 HSPs)
chr5 (281-319)||(16449537-16449575)
chr5 (126-194)||(16449385-16449453)
[»] scaffold0603 (1 HSPs)
scaffold0603 (281-319)||(2152-2190)
[»] chr7 (1 HSPs)
chr7 (531-577)||(8423632-8423678)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 4132753 - 4133325
Alignment:
Q  17 aatttggggtgatgacattgtgaatgtactgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaaaacata 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4132753 aatttggggtgatgacattgtgaatgtgctgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaagacata 4132852  T
Q  117 aaatgcttggatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4132853 aaatgcttggatgggaagtggcttcaacatctcacctctctccaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagt 4132952  T
Q  217 tgccttcctcccttaaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4132953 tgccttcctcccttaaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacat 4133052  T
Q  317 tccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtcaccaaaacatatacttctttcaattttcatgttataaaagtca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4133053 tccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtcaccaaaacatatacttctttcaattttcatgttataaaagtca 4133152  T
Q  417 ccaacaaatattttattttcatacatt------------tgccctttatgtctttcaactttgactatgtttcagtgtttcatttcatgattgtgtgttt 504  Q
    |||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4133153 ccaacaaatattttattttcatacatttgccctatagtatgccctttatgtctttcaactttgactatgtttcagtgtttcatttcatgattatgtgttt 4133252  T
Q  505 ggtgattgtttatttttcagtgacaattctccacgatatctcttagtctcgcagattctcaacttcgacactc 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4133253 ggtgattgtttatttttcagtgacaattctccacgatatctcttagtctcgcagattctcaacttcgacactc 4133325  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 319
Target Start/End: Complemental strand, 4057788 - 4057518
Alignment:
Q  46 tgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaaaacataaaatgcttggatgggaagtggcttcaaca 145  Q
    ||||||||| ||||||||||||||||||  ||||||| || || |||| |||||||   |||||| | ||| ||||||||||||| ||||||||||||||    
T  4057788 tgatgaaaatggaagttccattgctacccacttctctggtttccttaacgatctct---cttgaagatatagaatgcttggatggcaagtggcttcaaca 4057692  T
Q  146 tctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcctcccttaaagtgttgaatatc 245  Q
    |||||||||||| ||| |  || | |||  |||| |||||||||||||||| |||||| || ||||||||||||||||||| ||||||||  ||  ||||    
T  4057691 tctcacctctctccaaaaacttaagattgatgattctcccaagctcaagtcattgccagaagaggggaagttgccttcctctcttaaagtactgcgtatc 4057592  T
Q  246 aaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    ||  | || || |||||| ||| || ||| |  | |||||| ||||||||||||||||||||| ||||||||||    
T  4057591 aatgactgcccattgttggaagaaatttgccgaaggaagcgtgggaaagagtggcgtaagatttctcacattcc 4057518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 380
Target Start/End: Complemental strand, 4104870 - 4104539
Alignment:
Q  46 tgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaaaacataaaatgcttggatgggaagtggcttcaaca 145  Q
    ||||||||| ||||||||||||||||||  |||||||||| || |||  |||||||   |||||| | ||| ||||||||||||||||||||||||||||    
T  4104870 tgatgaaaatggaagttccattgctacccacttctctcgtttccttagcgatctct---cttgaagatatagaatgcttggatgggaagtggcttcaaca 4104774  T
Q  146 tctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcctcccttaaagtgttgaatatc 245  Q
    ||| || || || ||| | | | | ||| |||  ||    |||||||||||||||||| || ||||||||||||||||||| ||||||||  || |||||    
T  4104773 tctgacgtccctacaaaaatgtaagattcttggcgcagtgaagctcaagtcgttgccagaagaggggaagttgccttcctctcttaaagtactgcatatc 4104674  T
Q  246 aaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattccatcggtacttatcaatggacaaatga 345  Q
     | || || ||||| |||  |||||||| || || ||||  |||||||||||||||||||||||||   ||||| |   || ||||||| ||| | || |    
T  4104673 tataattgcccgttattggcagcaagtttgctgaggaaggaagggaaagagtggcgtaagattgctagaattccctttatatttatcaacggaaatatca 4104574  T
Q  346 tcacatgagtatcatgtcgaggtgagtcaccaaaa 380  Q
    ||||||||||||||  || ||||||||||||||||    
T  4104573 tcacatgagtatcacatcaaggtgagtcaccaaaa 4104539  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 4077399 - 4077210
Alignment:
Q  46 tgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaaaacataaaatgcttggatgggaagtggcttcaaca 145  Q
    ||||||||| ||||||||||||||||||  |||||||||| || |||| |||||||   ||| || ||||| |||||||||||| ||| |||||||||||    
T  4077399 tgatgaaaatggaagttccattgctacccacttctctcgtttccttaacgatctctaatcttaaagacatagaatgcttggatgtgaattggcttcaaca 4077300  T
Q  146 tctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcctcccttaaagt 235  Q
    |||||||||||| ||| |  || | |||  |||| |||||||| ||||||| || ||| || |||| |||||||||||||| ||||||||    
T  4077299 tctcacctctctccaaaaacttaacatttctgattctcccaagatcaagtcatttccagaagagggaaagttgccttcctctcttaaagt 4077210  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 319
Target Start/End: Complemental strand, 4089466 - 4089272
Alignment:
Q  122 cttggatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgcct 221  Q
    ||||||||| |||||||||||||||||||||||||| ||| |  ||   |||| ||||||||| ||||||| ||| || ||| || ||||   |||||||    
T  4089466 cttggatggaaagtggcttcaacatctcacctctctccaaaaacttttcattaatgatgctccaaagctcatgtcatttccagaagaggg---gttgcct 4089370  T
Q  222 tcctcccttaaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    ||||| ||| |||   || |||||| | | || || |||||| ||||||||| || ||||||||||||||||||| || |||| ||| |||| |||||    
T  4089369 tcctctcttcaagaactgcatatcacagactgcccattgttggaagcaagtttgctgaagaagcgagggaaagagaggtgtaaaatttctcatattcc 4089272  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 2922128 - 2922210
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaa 208  Q
    |||||||||||||||||||||||||||||||| ||| |  |||| ||| || |||||||||| ||||| ||||||||||||||    
T  2922128 gatgggaagtggcttcaacatctcacctctctccaaaagcttgagattgttaatgctcccaaactcaattcgttgccaaaaaa 2922210  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 11488857 - 11488775
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaa 208  Q
    |||||||||||||||||||||||||| ||||| ||| |  |||| |||||| |||||||||| |||||||| |||||||||||    
T  11488857 gatgggaagtggcttcaacatctcacttctctccaaaaccttgagattattaatgctcccaaactcaagtcattgccaaaaaa 11488775  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 5968415 - 5968605
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcct 225  Q
    ||||||||||||||||||||||| || ||||| ||| |  |||| ||| || | |||||||| || ||||| ||||||||||| ||    ||||||||||    
T  5968415 gatgggaagtggcttcaacatctgacttctctccaaaaccttgagattgttaacgctcccaaactaaagtcattgccaaaaaaagga---ttgccttcct 5968511  T
Q  226 cccttaaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    | |||  |||  | | ||| |   | ||||||||  || | ||||||| || || ||||| |||||||||||||||||||||||||||||||||    
T  5968512 ctctttcagtactaagtatgactcactgtccgttactggatgcaagtttgcggaggaagcaagggaaagagtggcgtaagattgctcacattcc 5968605  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 11494947 - 11494855
Alignment:
Q  281 gaagcgagggaaagagtggcgtaagattgctcacattccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtc 373  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||  || ||||| |||   || |||||||||||||||| ||||  ||||||||    
T  11494947 gaagcgagggaaagaatggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatcttgtccgggtgagtc 11494855  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 13936274 - 13936460
Alignment:
Q  46 tgatgaaaacggaagttccattgctacctgcttctctcgtctctttaaagatctctttacttgaaaacataaaatgcttggatgggaagtggcttcaaca 145  Q
    ||||||||| ||||||||| ||||||||  |||||||||| || |||| |||||||||   |||| | ||| ||||||||||||||||||||||||||||    
T  13936274 tgatgaaaatggaagttccgttgctacccacttctctcgtttccttaacgatctcttt---tgaagatatagaatgcttggatgggaagtggcttcaaca 13936370  T
Q  146 tctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcctcccttaaagt 235  Q
    |||||||||||| ||  |  || | |||  || | |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  13936371 tctcacctctctccaggaacttaagatttctggttctcccaagctcaagtcattgccagaaaaggggaagttgccttcctctcttaaagt 13936460  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 17314492 - 17314547
Alignment:
Q  264 aaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    |||| ||||| || || ||||||||| |||||||||||||||||||||||||||||    
T  17314492 aaagaaagtttgcggaggaagcgaggaaaagagtggcgtaagattgctcacattcc 17314547  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 18390651 - 18390841
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcct 225  Q
    |||||||||||||||||||||||  | ||||||||| |  |||| ||| || | |||||||| |||||||||||||||||||| |   | |||| |||||    
T  18390651 gatgggaagtggcttcaacatcttccttctcttcaaaaccttgagattgttaacgctcccaaactcaagtcgttgccaaaaaaag---aattgctttcct 18390747  T
Q  226 cccttaaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    | |||  |||  | ||| | |     ||||| || ||| ||| ||||| || ||||||||||||||||||||||| ||||||| ||||||||||    
T  18390748 ctctttcagtactaaatgtgacttgttgtccattattggaaggaagtttgcggaagaagcgagggaaagagtggcataagatttctcacattcc 18390841  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 5991269 - 5991313
Alignment:
Q  275 gcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||    
T  5991269 gcagaggaagcgagggaaagagtggcgtaagattgctcatattcc 5991313  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 5991123 - 5991203
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaagtcgttgccaaaa 206  Q
    |||||||||||| ||||||||||||||| ||| ||| |  |||| ||| || | |||||||| |||||||| |||||||||    
T  5991123 gatgggaagtggtttcaacatctcacctttctccaaaaccttgagattgttaacgctcccaaactcaagtcattgccaaaa 5991203  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 16449537 - 16449575
Alignment:
Q  281 gaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16449537 gaagcgagggaaagagtggcgtaagattgctcatattcc 16449575  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 16449385 - 16449453
Alignment:
Q  126 gatgggaagtggcttcaacatctcacctctcttcaacattttgatattattgatgctcccaagctcaag 194  Q
    ||||||||||||||||||||||||  |||||| ||| |  |||| |||||| |||||||||| ||||||    
T  16449385 gatgggaagtggcttcaacatctcgtctctctccaaaaacttgagattattaatgctcccaaactcaag 16449453  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 2190 - 2152
Alignment:
Q  281 gaagcgagggaaagagtggcgtaagattgctcacattcc 319  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  2190 gaagcaagggaaagagtggcgtaagattgcccacattcc 2152  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 577
Target Start/End: Original strand, 8423632 - 8423678
Alignment:
Q  531 ttctccacgatatctcttagtctcgcagattctcaacttcgacactc 577  Q
    |||||||| ||||||||||||||| || ||||||| |||||||||||    
T  8423632 ttctccacaatatctcttagtctcacaaattctcatcttcgacactc 8423678  T

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