View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_82 (Length: 286)
Name: NF2479_low_82
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24685342 - 24685611
Alignment:
| Q |
1 |
acagtggtaagtgcaacatttagaagattcacggcttttgtttgtctacctcagtcgagctcctaggtctttttccttaattctctctgcttctggtttt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24685342 |
acagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggtttt |
24685441 |
T |
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| Q |
101 |
agcatctcgtggtccagaaactagtatgtcatgttccttttggaccagcaaattgttgtcagctaggacctctccatcaaggttttcatttgagggaagc |
200 |
Q |
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| T |
24685442 |
atcatctcgtggtccagaaactagtatgtcatgttccttttggaccagcaaattgttgtcagctaggacctctccatcaaggttttcatttgagggaagc |
24685541 |
T |
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| Q |
201 |
ctggaactatttgagggttcccataattaaagttcctgcaaaaaataaatgaatataaaaggactaaaga |
270 |
Q |
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| T |
24685542 |
ctggaactatttgagggttcccataattaaagttcctgcaaaaaataaatgactataaaaggactaaaga |
24685611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 24631963 - 24632147
Alignment:
| Q |
7 |
gtaagtgcaacatttagaagattcacggcttttgtttgtctacctcagtcgagctcctaggtctttttccttaattctctctgcttctggttttagcatc |
106 |
Q |
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| T |
24631963 |
gtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctgagttatctctctttctggctttatcata |
24632062 |
T |
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| Q |
107 |
tcgtggtccagaaactagtatgtcatgttccttttggaccagcaaattgttgtcagctaggacctctccatcaaggttttcattt |
191 |
Q |
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| T |
24632063 |
ttgtggttcaaaaactagtatctcatgtcccttttagtcctgctaattgttgtcagctagaacttgttcatcagggttttgattt |
24632147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 24632215 - 24632261
Alignment:
| Q |
213 |
gagggttcccataattaaagttcctgcaaaaaataaatgaatataaa |
259 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24632215 |
gaggtttcccataattaaagttcctgcaaaaaataaatgagtataaa |
24632261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 41800168 - 41800317
Alignment:
| Q |
18 |
atttagaagattcacggcttttgtttgtctacctcagtcgagctcctaggtcttttt-ccttaattctctctgcttctggttttagcatctcgtggtcca |
116 |
Q |
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|||||||||||||||||||| ||||| |||||||| | ||||||||| ||||||| ||| |||| ||| ||||||| |||||| | ||| | || || |
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| T |
41800168 |
atttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgttttatcttcttctagttca |
41800267 |
T |
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| Q |
117 |
gaaactagtatgtcatgttccttttggaccagcaaattgttgtcagctag |
166 |
Q |
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| T |
41800268 |
gaaactagtatttcacgttccttttgggcctgcaaattcttggcagctag |
41800317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41806277 - 41806353
Alignment:
| Q |
1 |
acagtggtaagtgcaacatttagaagattcacggcttttgtttgtctacctcagtcgagctcctaggtctttttcct |
77 |
Q |
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||||| ||||||| || |||||||||||| ||||||| |||||||| |||||| || || ||||| |||||||||| |
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| T |
41806277 |
acagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcct |
41806353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 278497 - 278375
Alignment:
| Q |
16 |
acatttagaagattcacgg--cttttgtttgtctacctcagtcgagctcctaggtctttttccttaattctctctgcttctggttttagcatctcgtggt |
113 |
Q |
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|||||||||||||||| || ||| ||||||| ||||||| | |||||||||| |||||||||| |||| ||| ||||| |||||||| | ||| |||| |
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| T |
278497 |
acatttagaagattcatgggccttctgtttgt-tacctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttttatcctcttctggt |
278399 |
T |
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| Q |
114 |
ccagaaactagtatgtcatgttcc |
137 |
Q |
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||||||||||||| ||| ||||| |
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| T |
278398 |
tcagaaactagtatttcacgttcc |
278375 |
T |
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