View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_85 (Length: 281)
Name: NF2479_low_85
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 25745259 - 25745523
Alignment:
| Q |
1 |
cagagtgcaaaaaaggaccaagagaattaggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttctctacact |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745259 |
cagagtgcaaaaaaggaccaagagaatttggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttctctacact |
25745358 |
T |
|
| Q |
101 |
tattcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745359 |
tattcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaat |
25745458 |
T |
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| Q |
201 |
tttgttgcatgaaaggcgattaaccaccacagaagaattcaagaacaactcaatatgtttgtaaa |
265 |
Q |
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| T |
25745459 |
tttgttgcatgaaaggcgattaaccaccacagaagaattcaagaacaactcaatatgtttgtaaa |
25745523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 25739243 - 25739504
Alignment:
| Q |
2 |
agagtgcaaaaaaggaccaagagaattaggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttctctacactt |
101 |
Q |
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|||||||| ||||||||||||||||||||| ||| ||||||| || ||||| |||||| ||||||| ||||||||||||||||||| || | ||||| |
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| T |
25739243 |
agagtgcataaaaggaccaagagaattaggcgacggatcataaaa--aactaaagttttatatgatcataactcaagttatcatgttgatccgtgcactt |
25739340 |
T |
|
| Q |
102 |
attcgattatcgaaagaaatgctgaactttgactttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaatt |
201 |
Q |
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| T |
25739341 |
attcaattattgagaggaatactgaactttgactttgagaagatcaccaagcattcttctaaaatgcataatcaactggtagccacaaacacgaccactt |
25739440 |
T |
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| Q |
202 |
ttgttgcatgaaaggcgattaaccaccacagaagaattcaagaacaactcaatatgtttgtaaa |
265 |
Q |
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| T |
25739441 |
ttgttgcgtaaaatgcgattaaccaccacagaagaattcgagcacaactcaatatgtttataaa |
25739504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 25731707 - 25731811
Alignment:
| Q |
153 |
cattcgtctaaaatgcataatcaactggtagccacaaacacggccaattttgttgcatgaaaggcgattaaccaccacagaagaattcaagaacaactca |
252 |
Q |
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||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
25731707 |
cattcttctaaaatg-ataatcaaatggtagccacaaacacgaccatttttgttgcgtgaaaggtgattaaccaccacagaagaattcaaacacaactca |
25731805 |
T |
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| Q |
253 |
atatgt |
258 |
Q |
| |
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|||||| |
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| T |
25731806 |
atatgt |
25731811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 25731322 - 25731463
Alignment:
| Q |
2 |
agagtgcaaaaaaggaccaagagaattaggagactgatcatataattaactatagttttgcatgatcacaactcaagttatcatgttgttctctacactt |
101 |
Q |
| |
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||||||||||||| ||| ||||||||||| ||||||||||| || ||||| |||||| |||||||| |||||||||||||||||| || ||||||| |
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| T |
25731322 |
agagtgcaaaaaatgac--agagaattaggcgactgatcataaaa--aactaaagttttatatgatcacgactcaagttatcatgttgatccgtacactt |
25731417 |
T |
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| Q |
102 |
attcgattatcgaaagaaatgctgaactttgactttgacaaaatca |
147 |
Q |
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||||| ||| ||||| ||||| | |||||||||||||||||||| |
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| T |
25731418 |
attcggttactgaaaggaatgccaacctttgactttgacaaaatca |
25731463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 25762254 - 25762365
Alignment:
| Q |
153 |
cattcgtctaaaatgcataatcaactggtagccacaaacacggccaattttgttgcatgaaaggcgattaaccaccacagaagaattcaagaacaactca |
252 |
Q |
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||||| ||||| ||| |||||||||| ||||||| ||||| || ||||||||| |||||| | ||||||| || | ||||||||||| ||||||| |
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| T |
25762254 |
cattcttctaatatgtataatcaacttatagccactaacacaatcatttttgttgcttgaaagacacttaaccatcatataagaattcaagtgcaactca |
25762353 |
T |
|
| Q |
253 |
atatgtttgtaa |
264 |
Q |
| |
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|||| ||||||| |
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| T |
25762354 |
atatttttgtaa |
25762365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 45300362 - 45300246
Alignment:
| Q |
136 |
ttgacaaaatcaccaaccattcgtctaaaatgcataatcaactggtagccacaaacacggccaattttgttgcatgaaaggcgattaaccaccacagaag |
235 |
Q |
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|||||||||| ||||| |||| |||| |||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||||||||| || |||| |
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| T |
45300362 |
ttgacaaaattaccaagcattattctattatgcataatcaactggtagccattaacatgcccatttttgttgcctgaaaggcgattaaccacgacggaag |
45300263 |
T |
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| Q |
236 |
aattcaagaacaactca |
252 |
Q |
| |
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||||||| |||||||| |
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| T |
45300262 |
gattcaagcacaactca |
45300246 |
T |
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