View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_86 (Length: 280)
Name: NF2479_low_86
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 4739278 - 4739433
Alignment:
| Q |
2 |
gagataaagttgaagttgtggaaccatttttgtggagacaaaatgtcttcatgtggtgttaacttttgggttcaatcttaatttgtttaaatggcttata |
101 |
Q |
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| T |
4739278 |
gagataaagttgaagttgtggaaccatttttgtggagacaaaatgtcttcatgtggtgttaagttttgggttcaatcttcacttgcttaactggcttata |
4739377 |
T |
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| Q |
102 |
tcttgaattgaaagtgtgttgtcataatctttgtcgttatcacattgaaaatattttatat |
162 |
Q |
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| T |
4739378 |
tc-----ttgaaagtgtgttgccatactctttgccgttatcacattgaaaatattttatat |
4739433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 55156574 - 55156481
Alignment:
| Q |
120 |
ttgtcataatctttgtcgttatcacattgaaaatattttatatatttataaaactgtattttaatgtgatagcaaaattggagaaaaatagaat |
213 |
Q |
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| T |
55156574 |
ttgtcatattcttttccgttatcacattgaaaacattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaat |
55156481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 32309420 - 32309548
Alignment:
| Q |
119 |
gttgtcataatctttgtcgttatcacattgaaaatattttatatatttataaaactgtattttaatgtgatagcaaaattggagaaaaatagaatgagct |
218 |
Q |
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| T |
32309420 |
gttgtcatactcctttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagct |
32309519 |
T |
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| Q |
219 |
cgagacttatttgcaagagggaaagtcca |
247 |
Q |
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| T |
32309520 |
tgtgatttatttgttagaggaaaagtcca |
32309548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 30330240 - 30330112
Alignment:
| Q |
119 |
gttgtcataatctttgtcgttatcacattgaaaatattttatatatttataaaactgtattttaatgtgatagcaaaattggagaaaaatagaatgagct |
218 |
Q |
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||||||||| || || ||||||||||||||||| |||| |||| ||| | ||| ||| |||||||||||| | ||||||||||||||| || |||||| |
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| T |
30330240 |
gttgtcatactcctttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagct |
30330141 |
T |
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| Q |
219 |
cgagacttatttgcaagagggaaagtcca |
247 |
Q |
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| T |
30330140 |
tgtgatttatttgttagaggaaaagtcca |
30330112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 33364650 - 33364776
Alignment:
| Q |
119 |
gttgtcataatctttgtcgttatcacattgaaaatattttatatatttataaaactgtattttaatgtgatagcaaaattggagaaaaatagaatgagct |
218 |
Q |
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||||||||| || || ||||||||||||||||| |||| |||| ||| | ||| ||| |||||||||||| | ||||||||||||||| || |||||| |
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| T |
33364650 |
gttgtcatactcctttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagct |
33364749 |
T |
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| Q |
219 |
cgagacttatttgcaagagggaaagtc |
245 |
Q |
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| T |
33364750 |
tgtgatttatttgttagaggaaaagtc |
33364776 |
T |
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