View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_87 (Length: 278)
Name: NF2479_low_87
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_87 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 14713798 - 14714061
Alignment:
| Q |
21 |
atataatataaaagtaaggccattatttttgtcatctgatgatttttcgggcgtcctatttagagtataaattcgaaatattttaacttactttaaaaag |
120 |
Q |
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| T |
14713798 |
atataatatacgagtaaggctattatttttgtcatcagataatttttcgcgcgtcctatttagattataattccaaaatattttaacttgcttttgaaag |
14713897 |
T |
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| Q |
121 |
tttttatggggcatttatgttgttcagattctataatccaaactacatagagcacgc---------------------aagaagtagtctgaatgtaata |
199 |
Q |
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| T |
14713898 |
tttttatgggacatttatgttgttcggattctataatccaaactgcatagagcaagcaagaaactcataggatggaaaaagaagtactctgaatgtaata |
14713997 |
T |
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| Q |
200 |
gcattgcacataccattgttgtggctttgatgacagtatccgaatcaaacccatgaatgtttgt |
263 |
Q |
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| T |
14713998 |
gtattgcacataccattgttgtggctttgatgacagtatccgaatgaaacccatgaatgtttgt |
14714061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 14754439 - 14754496
Alignment:
| Q |
206 |
cacataccattgttgtggctttgatgacagtatccgaatcaaacccatgaatgtttgt |
263 |
Q |
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| T |
14754439 |
cacataccattgttgtggctttgatgatagtatccgaatcaaacccatgaatgtttgt |
14754496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 29263845 - 29263783
Alignment:
| Q |
121 |
tttttatggggcatttatgttgttcagattctataatccaaactacatagagcacgcaagaag |
183 |
Q |
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| T |
29263845 |
tttttattgggtgtttatgtcgttcagattctataatctaaaccacatagagcatgcaagaag |
29263783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 2749219 - 2749165
Alignment:
| Q |
120 |
gtttttatggggcatttatgttgttcagattctataatccaaactacatagagca |
174 |
Q |
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| T |
2749219 |
gtttttatggggcatttatggtgttcggattctataatccaaattgcatagagca |
2749165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 37507613 - 37507655
Alignment:
| Q |
120 |
gtttttatggggcatttatgttgttcagattctataatccaaa |
162 |
Q |
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| T |
37507613 |
gtttttatggggtatttatgtcgttcagattctataaaccaaa |
37507655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 53689083 - 53689124
Alignment:
| Q |
121 |
tttttatggggcatttatgttgttcagattctataatccaaa |
162 |
Q |
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| T |
53689083 |
tttttatggggtgtttatgtcgttcagattctataatccaaa |
53689124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 35424895 - 35424867
Alignment:
| Q |
142 |
gttcagattctataatccaaactacatag |
170 |
Q |
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| T |
35424895 |
gttcagattctataatccaaactacatag |
35424867 |
T |
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