View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_88 (Length: 276)
Name: NF2479_low_88
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 43895820 - 43895592
Alignment:
| Q |
18 |
atatgcatattgcacgaagggaccagaagaaatgagtttgttttatgcttccatgtctgggatgtcattgccctacatgagagaaatgttggagaattat |
117 |
Q |
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| T |
43895820 |
atatgcatattgcacgaagggaccagaagaaatgagtttgttttatgcttccatgtctgggatgtcattgccctacatgagggaaatgttggagaattat |
43895721 |
T |
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| Q |
118 |
gatggcttcaaaggtgtggagactctagttgatgttggtggcaattctggtgtgagtctcaacatgattatgaacaaatatccaaacatactcaaaggca |
217 |
Q |
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| T |
43895720 |
gatggcttcaaaggtgtggagactctagttgatgttggtggcaattctggtgtgagtctcaacatgattatgaacaaatatccaaacatactcaaaggca |
43895621 |
T |
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| Q |
218 |
tcaattttgatcttcctgatatgatctct |
246 |
Q |
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| T |
43895620 |
tcaattttgatcttcctgatatgatctct |
43895592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 43907324 - 43907100
Alignment:
| Q |
18 |
atatgcatattgcacgaagggaccagaagaaatgagtttgttttatgcttccatgtctgggatgtcattgccctacatgagagaaatgttggagaattat |
117 |
Q |
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||||||||| |||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||| |
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| T |
43907324 |
atatgcatactgcatgaagagaccagatgaaatgagtttgttttacgcttccatgtctggaatgtcaatgccccacatgaatgaaatgttggagaagtat |
43907225 |
T |
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| Q |
118 |
gatggcttcaaaggtgtggagactctagttgatgttggtggcaattctggtgtgagtctcaacatgattatgaacaaatatccaaacatactcaaaggca |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43907224 |
gatggcttcaaaggtgtggaatctctagttgatgttggtggaaattctggtgtgattctcaatatgattatgaacaaatatccaaacatactcaaaggca |
43907125 |
T |
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| Q |
218 |
tcaattttgatcttcctgatatgat |
242 |
Q |
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| T |
43907124 |
tcaattttgatcttcctgatatgat |
43907100 |
T |
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