View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_93 (Length: 271)
Name: NF2479_low_93
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 22979363 - 22979114
Alignment:
| Q |
19 |
aatctttcacttgggaacatttggtgagctcattcatctaagtttatcttataactttattaaagaagataattcttcannnnnnnaggatcatgtcttt |
118 |
Q |
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| T |
22979363 |
aatctttcacttgggaacatttggtgagctcattcatcttagtttatcttataactttattcaagaagataattcttcattgttttaggattatgtcttt |
22979264 |
T |
|
| Q |
119 |
atatttttcacctgnnnnnnnnnta--ccttcatatttctatttaatattcttaagtatttataagaatttctaggtgttatttccatttaagtttctta |
216 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22979263 |
atatttttcacctgaaaaaaaaaaaaaccttcatatttctatttaatattcttaagtgtttataagaatttctaggtgttatttccatttaagtttctta |
22979164 |
T |
|
| Q |
217 |
tacactcacccttttatgagtggaatgcttatacactcacctttgctact |
266 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
22979163 |
tacactcaccctttcatgagtggaatgcttatacactcaccttagctact |
22979114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 22966908 - 22966789
Alignment:
| Q |
146 |
ttcatatttctatttaatattcttaagtatttataagaatttctaggtgttatttccatttaagtttcttatacactcacccttttatgagtggaatgct |
245 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||| || |
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| T |
22966908 |
ttcatatttctatttaatattcttacgtatttataagaattcctaagtgttatttccatttaagtttcttatacactca-ccttttttgagaggaattct |
22966810 |
T |
|
| Q |
246 |
tatacactcacctttgctact |
266 |
Q |
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|||||||||||||| |||||| |
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| T |
22966809 |
tatacactcaccttagctact |
22966789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 22967021 - 22966965
Alignment:
| Q |
23 |
tttcacttgggaacatttggtgagctcattcatctaagtttatcttataactttatt |
79 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
22967021 |
tttcacttgggaacatttggtgagctcattcatcttagtttatcttatcactttatt |
22966965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 21883719 - 21883839
Alignment:
| Q |
146 |
ttcatatttctatttaatattcttaagtatttataagaatttctaggtgttatttccatttaagtttcttatacactcacccttttatgagtggaatgct |
245 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || ||||| || |
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| T |
21883719 |
ttcatatttctatttaatattcttacgtatttataagaattcctaagtgttatttccatttaagtttcttatacactcaccttttttgtagaggaattct |
21883818 |
T |
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| Q |
246 |
tatacactcacctttgctact |
266 |
Q |
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|||||||||||||| |||||| |
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| T |
21883819 |
tatacactcaccttagctact |
21883839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 21883606 - 21883662
Alignment:
| Q |
23 |
tttcacttgggaacatttggtgagctcattcatctaagtttatcttataactttatt |
79 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
21883606 |
tttcacttgggaacatttggtgagctcattcatcttagtttatcttatcactttatt |
21883662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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