View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2480_high_7 (Length: 279)
Name: NF2480_high_7
Description: NF2480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2480_high_7 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 31034070 - 31033823
Alignment:
| Q |
16 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
115 |
Q |
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| T |
31034070 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
31033971 |
T |
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| Q |
116 |
tcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctg |
215 |
Q |
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| T |
31033970 |
tcgaagtcgtggactaaccctttaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatctcatatctgcttcaggctg |
31033871 |
T |
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| Q |
216 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggt |
263 |
Q |
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| T |
31033870 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggt |
31033823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 31097993 - 31098150
Alignment:
| Q |
105 |
gatattcaatatcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatct |
204 |
Q |
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| T |
31097993 |
gatatacaatatcgcagtggtggactaaacctttagtttgtttaggacttggcatcgagtcagaagactaggggaggttttgtgtaaatatctcgtatct |
31098092 |
T |
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| Q |
205 |
gcttcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggagg |
262 |
Q |
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| T |
31098093 |
gactcaggctggcattgtagtcagggatagttaaaatcattacttctgaagtgggagg |
31098150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 31093211 - 31093302
Alignment:
| Q |
60 |
aaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtcgtggactaaccctctaccttttttagga |
151 |
Q |
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| T |
31093211 |
aaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 30933 - 31180
Alignment:
| Q |
16 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
115 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
30933 |
attcaggataaaaatgtttcgaccgatactatttcagaaaaggtaagtgctttcctgaaactggataaggtcaaaatcatcgaggtttggatatgcaata |
31032 |
T |
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| Q |
116 |
tcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctg |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
31033 |
tcaaagttgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatcccatttctgcttcaggctg |
31132 |
T |
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| Q |
216 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31133 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggt |
31180 |
T |
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