View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2480_low_10 (Length: 249)
Name: NF2480_low_10
Description: NF2480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2480_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10044712 - 10044945
Alignment:
| Q |
1 |
cataactggtatagataagttctcttgattttaattactccatctgtttctttttacttgttgcttttatagannnnnnnnnnctggtatagataagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10044712 |
cataactggtatagataagttctcttgattttaattactccatctgtttctttttacttgttgcttttatagattttttttttctggtatagataagtgc |
10044811 |
T |
|
| Q |
101 |
aatgcaatatacgctactgttttatcattattacactttagtatttattgcaaacagtaatgagataataaatagttaagactcttataggtaaaagaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10044812 |
aatgcaatatacgctactgttttatcatcattacactttagtatttattgcaaacagtaatgagataataaatagttaagactctcataggtaaaagaga |
10044911 |
T |
|
| Q |
201 |
aataattatatcaaaagtaataagatctattgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10044912 |
aataattatatcaaaagtaataagatctattgat |
10044945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 3763271 - 3763208
Alignment:
| Q |
159 |
aatgagataataaatagttaagactcttataggtaaaagagaaataattatatcaaaagtaata |
222 |
Q |
| |
|
||||| ||||||||||||||||| | |||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
3763271 |
aatgatataataaatagttaagagtattatagaaaaaagacaaataattccatcaaaagtaata |
3763208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 55344490 - 55344457
Alignment:
| Q |
185 |
ttataggtaaaagagaaataattatatcaaaagt |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
55344490 |
ttataggtaaaagagaaataattgtatcaaaagt |
55344457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University