View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2480_low_2 (Length: 611)
Name: NF2480_low_2
Description: NF2480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2480_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 605
Target Start/End: Original strand, 32402921 - 32403507
Alignment:
| Q |
16 |
cataaaggtcattgagggtggaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcactggtactattttccaaatggccaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32402921 |
cataaaggtcattgagggtggaggagatgtctgtgaacaagtacttctacaaaaatgggacaaaatattcttcactggtactattttccaaatggccaaa |
32403020 |
T |
|
| Q |
116 |
ttcattcattgaactaaacttgtggaatatgcaaatattactactatatacattttaatttgattggctcaacaatcgttattctttcctttgaatttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32403021 |
ttcattcattgaactaaacttgtggaatatgcaaatattactactatatacattttaatttgattggctcaacactcgttattctttcctttgaatttga |
32403120 |
T |
|
| Q |
216 |
atttccttgcagtcagcagcaatctcacgcattcatgcagtaagcatgccggtaacattgaacttatgtgctaactgcgtgaatgcgtagaattgctcac |
315 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403121 |
atttccttgcagtgagca---atctcacgcattcatgcagtaagcatgccggtaacattgaacttatgtgctaactgcgtgaatgcgtagaattgctcac |
32403217 |
T |
|
| Q |
316 |
tgcatgcaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaattcttgttttagaattatctctacatgatgtatgac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32403218 |
tgcatgcaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaattcttgttctagaattatctctacatgatgtatgac |
32403317 |
T |
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| Q |
416 |
attttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctata |
515 |
Q |
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| T |
32403318 |
attttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctata |
32403417 |
T |
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| Q |
516 |
tttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcacatgtcaagatttttgttgtctctgct |
605 |
Q |
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| T |
32403418 |
tttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcacatgtcaagatttttgttgtctctgct |
32403507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 423 - 525
Target Start/End: Complemental strand, 6664730 - 6664628
Alignment:
| Q |
423 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatt |
522 |
Q |
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| T |
6664730 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagatatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatt |
6664631 |
T |
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| Q |
523 |
atc |
525 |
Q |
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||| |
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| T |
6664630 |
atc |
6664628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 6664786 - 6664729
Alignment:
| Q |
36 |
gaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcactgg |
93 |
Q |
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| T |
6664786 |
gaggagatgtctgtgaacaactactgctacaaaagtggggcaaaatattcttcactgg |
6664729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 424 - 525
Target Start/End: Complemental strand, 43304928 - 43304827
Alignment:
| Q |
424 |
gaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatta |
523 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43304928 |
gaagtccacgtgtggcaagcatagtcatgtcttttgctgcaagatatttaactcctgttactcgagagctaggtggaaaatgccctgctatatttgatta |
43304829 |
T |
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| Q |
524 |
tc |
525 |
Q |
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|| |
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| T |
43304828 |
tc |
43304827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 43304985 - 43304930
Alignment:
| Q |
36 |
gaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcact |
91 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
43304985 |
gaggagatgtctgtgaacaactactgctacaaaagtggggcaaaatattcttcact |
43304930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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