View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2480_low_4 (Length: 550)
Name: NF2480_low_4
Description: NF2480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2480_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 28485232 - 28485731
Alignment:
| Q |
20 |
ataaagaacttgctttatcaaaatctttctaatatgaagtatgttaataaattaatacatttatttgaaatggcactatgacagactaaaatgggagctg |
119 |
Q |
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| T |
28485232 |
ataaagaacttgctttatcaaaatctttctaatatgaatcatgttaataaattaatacatttatttgaaatggcactatgacagactaaaatgggagctg |
28485331 |
T |
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| Q |
120 |
ttttggcaatcctactagctacatttgctgggtttggagttgtaatgtgtggaacatgtattcttatagagatcttgaaatggaggagaagatggctggc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28485332 |
ttttggcaatcctactagctacatttgctgggtttggagttgtaatgtgtggaacatgtattcttatagagatcttgaaatggaggagaagatggcttgc |
28485431 |
T |
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| Q |
220 |
tcagttgaatcaacagaatgtcggttccgaggatgcggttcttcccgatcaatcatctgcagccactcatcaagttcaaattgattctcaacatactgag |
319 |
Q |
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| T |
28485432 |
tcagttgaatcaacagaatgtcggttccgaggatgcggttcttcccgatcaatcatctgcagccactcatcaagttcaaattgattctcaacatactgag |
28485531 |
T |
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| Q |
320 |
agtaatgtgggcaactctcctaggcaaatgagctgacagaatacatttttcatattttctcgaatgctggcatcattaaggtgtctgagtagcataaagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28485532 |
agtaatgtgggcaactctcctaggcaaatgagctgacagaatacatttttcatattttctcgaatgctagcatcattaaggtgtctgagtagcataaagt |
28485631 |
T |
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| Q |
420 |
tcatattgcataggcaaatttgagcacattattttcttgtatgtttaggaacagaaatttatcatgtgtgatttctgaaatctctcatcagaaacaaaga |
519 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28485632 |
tcatattgtataggcaaatttgagcacattattttcttgtatgtttaggaacagaaatttatcatgtgtgatttctgaaatctctcatcagaaacaaaga |
28485731 |
T |
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