View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2480_low_9 (Length: 250)

Name: NF2480_low_9
Description: NF2480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2480_low_9
NF2480_low_9
[»] chr1 (2 HSPs)
chr1 (18-250)||(12437365-12437600)
chr1 (65-101)||(2506641-2506677)
[»] chr4 (2 HSPs)
chr4 (68-101)||(14539374-14539407)
chr4 (65-101)||(17182591-17182627)
[»] chr8 (1 HSPs)
chr8 (65-101)||(43732789-43732825)
[»] chr7 (1 HSPs)
chr7 (65-101)||(36267659-36267695)
[»] chr5 (1 HSPs)
chr5 (69-101)||(10204678-10204710)
[»] chr3 (1 HSPs)
chr3 (65-101)||(42699718-42699754)
[»] chr2 (2 HSPs)
chr2 (65-101)||(33265708-33265744)
chr2 (65-101)||(45257409-45257445)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 12437600 - 12437365
Alignment:
Q  18 gatgactggaatacgaaaccacatagtacacaagcttaaactgaagtaatataataaatgatcatataacacttcaaaaa-cactccatccaaacataat 116  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12437600 gatgactagaatacgaaaccacatagtacacaaacttaaactgaaataatataataaatgatcatataacacttcaaaaaacactccatccaaacataat 12437501  T
Q  117 cttattgttattgtgcttaatcttggaagcaagaattaatccaatag--tgctcctaaacctttctttagatctaagtccaatcacttgttttcatggta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12437500 cttattgttattgtgcttaatcttggaagcaagaattaatccaatagagtgctcctaaacctttctttagatctaagtccaatcacttgttttcatggta 12437401  T
Q  215 cccacatcttctctaaagactagatcaagaccttgt 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  12437400 cccacatcttctctaaagactagatcaagaccttgt 12437365  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 2506677 - 2506641
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    |||||||||||||||||||||| ||||||||||||||    
T  2506677 aatataataaatgatcatataatacttcaaaaacact 2506641  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 14539407 - 14539374
Alignment:
Q  68 ataataaatgatcatataacacttcaaaaacact 101  Q
    ||||||||||||||||||| ||||||||||||||    
T  14539407 ataataaatgatcatataatacttcaaaaacact 14539374  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 17182591 - 17182627
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  17182591 aatatgataaatgatcatataatacttcaaaaacact 17182627  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 43732825 - 43732789
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  43732825 aatatgataaatgatcatataatacttcaaaaacact 43732789  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 36267659 - 36267695
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  36267659 aatatgataaatgatcatataatacttcaaaaacact 36267695  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 10204710 - 10204678
Alignment:
Q  69 taataaatgatcatataacacttcaaaaacact 101  Q
    |||||||||||||||||| ||||||||||||||    
T  10204710 taataaatgatcatataatacttcaaaaacact 10204678  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 42699718 - 42699754
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  42699718 aatatgataaatgatcatataatacttcaaaaacact 42699754  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 33265744 - 33265708
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  33265744 aatatgataaatgatcatataatacttcaaaaacact 33265708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 45257445 - 45257409
Alignment:
Q  65 aatataataaatgatcatataacacttcaaaaacact 101  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  45257445 aatatgataaatgatcatataatacttcaaaaacact 45257409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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