View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2481_high_1 (Length: 417)

Name: NF2481_high_1
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2481_high_1
NF2481_high_1
[»] chr3 (8 HSPs)
chr3 (18-404)||(3198481-3198876)
chr3 (254-367)||(3200563-3200679)
chr3 (340-386)||(3311116-3311162)
chr3 (340-386)||(3322715-3322761)
chr3 (254-367)||(3357769-3357885)
chr3 (228-295)||(3221845-3221912)
chr3 (343-386)||(3304440-3304483)
chr3 (253-295)||(3280652-3280694)
[»] chr1 (3 HSPs)
chr1 (331-404)||(41947698-41947771)
chr1 (253-294)||(49386834-49386875)
chr1 (228-287)||(41947592-41947651)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 3198481 - 3198876
Alignment:
Q  18 acatcttcattgaaatgagaagcaatttcagggtcaccaaatctggctgctttggtccctctttcagattgaaaatcaaaatctgtacttcttcttttga 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3198481 acatcttcattgaaataagaagcaatttcagggtcaccaaatctggctgctttggtccctctttcagattgaaaatcaaaatctgtacttcttcttttga 3198580  T
Q  118 ttcctgcaactgataatttgatgtcacgaatctcggaagcaacatgataaag---------ggttgggataatgtgaaaaatgttttggagtaaggctat 208  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||         ||||||||| ||||||||||| ||||||||||| |||||    
T  3198581 ttcccgcaactgataatttgatgtcacgaatctcggaaccaacatgataaagtgactttagggttgggatcatgtgaaaaatattttggagtaaagctat 3198680  T
Q  209 gagtccagaatggttgactctttgtaccacatttatgttatagtaatcaatcacatcttctatgcgaaaagattcttctctgagctgtttggtccaagct 308  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3198681 gagtccagaatggttgaccctttgtgccacattcatgttatagtaatcaatcacatcttctatgcgaaaagattcttctctcagctgtttggtccaagct 3198780  T
Q  309 tttacttctttattggcttctcctccttcttcagcagcctttgtgtcagcatccttgagcaaggcttggatgctctcatattcattttttatctct 404  Q
    ||||||||||||||||||  | |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||  ||||||||||||||||    
T  3198781 tttacttctttattggctcgttctccttcttcagcagcctttttgtctgcatccttgagcaaggtttggatgctctcaagttcattttttatctct 3198876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 367
Target Start/End: Complemental strand, 3200679 - 3200563
Alignment:
Q  254 atcaatcacatcttctatgcgaaaagattcttctctgagctgtttggtccaagcttttacttctttattgg---cttctcctccttcttcagcagccttt 350  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||   ||||| ||| | | |||  ||||   || |||||||||| ||||||||||||    
T  3200679 atcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagccttt 3200580  T
Q  351 gtgtcagcatccttgag 367  Q
    ||||| |||||||||||    
T  3200579 gtgtctgcatccttgag 3200563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 3311116 - 3311162
Alignment:
Q  340 cagcagcctttgtgtcagcatccttgagcaaggcttggatgctctca 386  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3311116 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctca 3311162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 3322715 - 3322761
Alignment:
Q  340 cagcagcctttgtgtcagcatccttgagcaaggcttggatgctctca 386  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3322715 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctca 3322761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 367
Target Start/End: Original strand, 3357769 - 3357885
Alignment:
Q  254 atcaatcacatcttctatgcgaaaagattcttctctgagctgtttggtccaagcttttacttctttattgg---cttctcctccttcttcagcagccttt 350  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||   ||||| ||| | | |||  ||||   || |||||||||| ||||||||| ||    
T  3357769 atcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagccctt 3357868  T
Q  351 gtgtcagcatccttgag 367  Q
    ||||| |||||||||||    
T  3357869 gtgtctgcatccttgag 3357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3221845 - 3221912
Alignment:
Q  228 ctttgtaccacatttatgttatagtaatcaatcacatcttctatgcgaaaagattcttctctgagctg 295  Q
    |||||||||| ||  ||| ||||  |||||||||||||||||||| |||||||| ||||||| |||||    
T  3221845 ctttgtaccaaatacatgctataacaatcaatcacatcttctatgtgaaaagatgcttctcttagctg 3221912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 3304440 - 3304483
Alignment:
Q  343 cagcctttgtgtcagcatccttgagcaaggcttggatgctctca 386  Q
    |||||||| |||||||||||||||| |||| |||||||||||||    
T  3304440 cagcctttctgtcagcatccttgaggaaggattggatgctctca 3304483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 3280652 - 3280694
Alignment:
Q  253 aatcaatcacatcttctatgcgaaaagattcttctctgagctg 295  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||    
T  3280652 aatcaatcacatcttctatacgaaaagatgcttctcttagctg 3280694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 41947698 - 41947771
Alignment:
Q  331 ctccttcttcagcagcctttgtgtcagcatccttgagcaaggcttggatgctctcatattcattttttatctct 404  Q
    ||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||||||  ||||| ||| ||||||    
T  41947698 ctccttcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgatctct 41947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 49386834 - 49386875
Alignment:
Q  253 aatcaatcacatcttctatgcgaaaagattcttctctgagct 294  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  49386834 aatcaatcacatcttctatgcgaaaagatgcttctctaagct 49386875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 41947592 - 41947651
Alignment:
Q  228 ctttgtaccacatttatgttatagtaatcaatcacatcttctatgcgaaaagattcttct 287  Q
    |||||||||| ||  ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  41947592 ctttgtaccaaatacatgttatagcaatcaatcacaacttttatgcgaaaagatgcttct 41947651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University