View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2481_high_10 (Length: 227)

Name: NF2481_high_10
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2481_high_10
NF2481_high_10
[»] chr2 (1 HSPs)
chr2 (172-227)||(37162530-37162585)
[»] chr7 (3 HSPs)
chr7 (1-48)||(43702637-43702684)
chr7 (1-43)||(12642597-12642639)
chr7 (1-43)||(42709230-42709272)
[»] chr3 (1 HSPs)
chr3 (1-43)||(33516702-33516744)
[»] chr1 (2 HSPs)
chr1 (1-43)||(43669655-43669697)
chr1 (1-43)||(46900155-46900197)
[»] chr8 (2 HSPs)
chr8 (2-43)||(41741093-41741134)
chr8 (88-149)||(5967774-5967835)
[»] chr5 (1 HSPs)
chr5 (1-43)||(39949087-39949129)
[»] scaffold0011 (1 HSPs)
scaffold0011 (88-149)||(156110-156171)


Alignment Details
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 37162585 - 37162530
Alignment:
Q  172 aaaaaagaattattgcatcgtgtaattgtttaacaaatccacacctcactttctgt 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37162585 aaaaaagaattattgcatcgtgtaataatttaacaaatccacacctcactttctgt 37162530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43702637 - 43702684
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatccatttcc 48  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  43702637 gggcagcagggagtgcaggagagaaaatgctgcagatgatccatttcc 43702684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12642597 - 12642639
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  12642597 gggcagcagggagtgcaggagagaaagtgctgcagatgatcca 12642639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42709272 - 42709230
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  42709272 gggcagcagggagtgcaggagagaaagtgctgcagatgatcca 42709230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33516744 - 33516702
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  33516744 gggcagcagggagtgcaggagagaaagtgctgcagatgatcca 33516702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43669697 - 43669655
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  43669697 gggcagcagggagtgcaggagagaaagtgctgcagatgatcca 43669655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46900197 - 46900155
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  46900197 gggcagcagggagtgcaggagagaaagtgctgcagatgatcca 46900155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 41741093 - 41741134
Alignment:
Q  2 ggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  41741093 ggcagcagggagtgcaggagagaaagtgctgcagatgatcca 41741134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 5967835 - 5967774
Alignment:
Q  88 ggaactgtagcgcgtggatattaagatttgtcgcgcgtctatgaaatttcttactgcaatat 149  Q
    ||||||||||||||||||||||| |||||  | ||||||  ||||| |||||||||||||||    
T  5967835 ggaactgtagcgcgtggatattaggattttacacgcgtccgtgaaaattcttactgcaatat 5967774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39949087 - 39949129
Alignment:
Q  1 gggcagcatggagtgcaggagagaaagtgctgcagatgatcca 43  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  39949087 gggcagcagggagtgcaggagagaaagtgctgcaggtgatcca 39949129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 156171 - 156110
Alignment:
Q  88 ggaactgtagcgcgtggatattaagatttgtcgcgcgtctatgaaatttcttactgcaatat 149  Q
    ||||||||||||||||||||||| |||||  | ||||||  ||||| |||||||||||||||    
T  156171 ggaactgtagcgcgtggatattaggattttacacgcgtccgtgaaaattcttactgcaatat 156110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University