View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_high_13 (Length: 205)
Name: NF2481_high_13
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 28812881 - 28812710
Alignment:
| Q |
19 |
cttaatgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatctttgtatgtttgaaacagtatcatcatgtagtagtttctttgca |
118 |
Q |
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| T |
28812881 |
cttaatgttacaaaatataaggtagtatttttgtattagaatccttttatgcgatctttgtatgttcgaaacagtatcatcatgtagtagtttctttgca |
28812782 |
T |
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| Q |
119 |
gggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaagg |
190 |
Q |
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| T |
28812781 |
gggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaagg |
28812710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 33490943 - 33491078
Alignment:
| Q |
55 |
tagaatccttttatgtgatctttgtatgtttgaaacagtatcatcatgtagtagtttctttgcagggaattggtgctgttgtgggagtcttgtctcataa |
154 |
Q |
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| T |
33490943 |
tagattccttttatgtaatctttgctcgtttgaaactgtatcagcatgtaataatttctttacaggaatttggtgctgttgtgggagtcttgtctcataa |
33491042 |
T |
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| Q |
155 |
tcttgcagaccttaatgatttacagaagtgtcaagg |
190 |
Q |
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| T |
33491043 |
tcttgcatgccttcatgatttacagaaatgtcaagg |
33491078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 33419821 - 33419880
Alignment:
| Q |
131 |
tgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaagg |
190 |
Q |
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| T |
33419821 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaagg |
33419880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 33419765 - 33419823
Alignment:
| Q |
21 |
taatgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatctttgt |
79 |
Q |
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| T |
33419765 |
taatgttacaaaatataagataatatttttgtaatagattccttttatgtaatctttgt |
33419823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 33412710 - 33412744
Alignment:
| Q |
117 |
cagggaattggtgctgttgtgggagtcttgtctca |
151 |
Q |
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| T |
33412710 |
cagggaattggagctgttgtgggagtcttgtctca |
33412744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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