View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_high_2 (Length: 360)
Name: NF2481_high_2
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 68 - 345
Target Start/End: Complemental strand, 2600972 - 2600695
Alignment:
| Q |
68 |
acatcatggctggtctaccaagatctgaagtatcattcagaagatcaggttcatctggtcttgtttgggatgatagattcttatcaggagaattaaacaa |
167 |
Q |
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| T |
2600972 |
acatcatggctggtctaccaagatctgaagtatcattcagaagatcaggttcatctggtcttgtttgggatgacagattcttatcaggagaattaaacaa |
2600873 |
T |
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| Q |
168 |
actcaagcaagaagaagaagataatactactaataattccaaagagcttcatgtgaaaaccaccgtacaaagaagccgctccaccggtgctggacgagga |
267 |
Q |
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| T |
2600872 |
actcaagcaagaagaagaagataatactactaataattccaaagagcttcgtgtgaaaaccaccgtacaaagaagccattccaccggtgctggaagagga |
2600773 |
T |
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| Q |
268 |
taccgtaccggaaaagtttcaccagcgatcgaaccaccgtctccaaaggtctctgcgtgtggattctgtagtcctttt |
345 |
Q |
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| T |
2600772 |
taccgtaccggaaaagtttcaccagcgatcgaaccaccgtctccaaaggtctccgcgtgtggattctgtagtcctttt |
2600695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 44510305 - 44510361
Alignment:
| Q |
87 |
aagatctgaagtatcattcagaagatcaggttcatctggtcttgtttgggatgatag |
143 |
Q |
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| T |
44510305 |
aagatctgcagtatcattcagaagacaaggttcatcagggtttgtttgggatgatag |
44510361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 44510489 - 44510565
Alignment:
| Q |
235 |
caaagaagccgctccaccggtgctggacgaggataccgtaccggaaaagtttcaccagcgatcgaaccaccgtctcc |
311 |
Q |
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| T |
44510489 |
caaagaagtcgttccaacggtggaggacgtggttaccgtaccggaaaagtttctccggcgattgagccaccgtctcc |
44510565 |
T |
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