View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2481_high_3 (Length: 355)

Name: NF2481_high_3
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2481_high_3
NF2481_high_3
[»] chr7 (5 HSPs)
chr7 (58-232)||(3270607-3270780)
chr7 (61-237)||(34144453-34144629)
chr7 (58-162)||(24976973-24977076)
chr7 (58-162)||(24977298-24977401)
chr7 (57-162)||(1774691-1774795)
[»] chr8 (3 HSPs)
chr8 (57-237)||(39643498-39643677)
chr8 (63-237)||(39643161-39643334)
chr8 (99-237)||(14101144-14101283)
[»] chr1 (3 HSPs)
chr1 (58-237)||(3222965-3223143)
chr1 (58-237)||(26542374-26542552)
chr1 (57-122)||(1796904-1796968)
[»] chr5 (1 HSPs)
chr5 (59-237)||(21045728-21045909)
[»] chr6 (1 HSPs)
chr6 (57-162)||(6889394-6889498)
[»] chr4 (2 HSPs)
chr4 (81-162)||(27065614-27065694)
chr4 (81-162)||(27086717-27086797)
[»] scaffold0161 (1 HSPs)
scaffold0161 (71-155)||(22708-22791)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 3270607 - 3270780
Alignment:
Q  58 tgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgg 157  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||| |||||||| || |||| |||||||||||    
T  3270607 tgttagatagtgaaattagacttaaataaatgatttagatatttagcttaagattaaaattatattagttggtctttcac-ttgagttattgttagttgg 3270705  T
Q  158 gccttatattaggtctttaatcttaaacccatcaggattactatccttcttatatatagggtctttgacacacta 232  Q
    ||||||| ||||||||||| |||||| ||||| ||| |||||||||||| ||||||||  |||||||||||||||    
T  3270706 gccttatgttaggtctttagtcttaagcccattagggttactatccttcctatatataatgtctttgacacacta 3270780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 34144453 - 34144629
Alignment:
Q  61 tagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgggcc 160  Q
    |||||| || |||||| || |||| ||| |||||  ||| |||||||||| ||| |||||||||||| ||||||||||| | ||||||| ||||||||||    
T  34144453 tagagaatgcaattaggctcaaatgaataatttagatatctagtttaagagtaagattatattagtttatctttcacttga-gttgttgctagttgggcc 34144551  T
Q  161 ttatattaggtctttaatcttaaa-cccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    |||  ||||||||||| |||| |  ||||| ||| |||||||| ||||||||||||| ||||||||||||| ||||||    
T  34144552 ttaagttaggtctttagtctttaggcccattagggttactatcattcttatatatagtgtctttgacacaccatccaa 34144629  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 24976973 - 24977076
Alignment:
Q  58 tgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgg 157  Q
    |||||||||||| ||||||| |||||| ||| ||||| |||||||||||||||  |||||||||||||||  ||||||  ||| |||||||  |||||||    
T  24976973 tgttagagagtgcaattagatttaaatgaataatttagttatttagtttaagagcaaaattatattagtttgtctttc-ttttgagttgtttctagttgg 24977071  T
Q  158 gcctt 162  Q
    |||||    
T  24977072 gcctt 24977076  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 24977401 - 24977298
Alignment:
Q  58 tgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgg 157  Q
    |||||||||||| ||||||| || ||| ||| |||||  ||||||||||||||  |||||||||||||||  ||||||  ||| |||||||  |||||||    
T  24977401 tgttagagagtgcaattagatttcaatgaataatttagctatttagtttaagagcaaaattatattagtttgtctttc-ttttgagttgtttctagttgg 24977303  T
Q  158 gcctt 162  Q
    |||||    
T  24977302 gcctt 24977298  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 1774795 - 1774691
Alignment:
Q  57 atgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttg 156  Q
    |||||||||||||| |||||||| |||| ||| |||||  |||||||||||  | || ||  || ||||||  |||||| |||||||||||| |||||||    
T  1774795 atgttagagagtgatattagactgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttc-ctttaagttgttattagttg 1774697  T
Q  157 ggcctt 162  Q
    ||||||    
T  1774696 ggcctt 1774691  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 39643677 - 39643498
Alignment:
Q  57 atgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttg 156  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||| | ||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  39643677 atgttagagagtgaaattagacttaaataaatgatttagatatctagtttaaaagtaaaattatatcagtttatctttcac-ttaagttgttgctagttg 39643579  T
Q  157 ggccttatattaggtctttaatcttaaacccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    ||||||| |||||||||||| ||||||  | || | | |||||||| ||| ||||||||| ||||||||||||||||||||    
T  39643578 ggccttaaattaggtctttagtcttaagtctattaaggttactatctttcctatatatagtgtctttgacacactatccaa 39643498  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 39643161 - 39643334
Alignment:
Q  63 gagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgggcctt 162  Q
    ||||||||||||||| ||||||||||||||||  ||| | |||||||| ||||||||||||| ||  |||||||||||| ||||||| ||||||||||||    
T  39643161 gagagtgaaattagatttaaataaatgatttagatatcttgtttaagactaaaattatattattttgtctttcacttta-gttgttgctagttgggcctt 39643259  T
Q  163 atattaggtctttaatcttaaacccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    |  ||||||||||| |||||| ||||| ||| |||||||||||| ||||| ||| || |||||||||||||||||    
T  39643260 aagttaggtctttagtcttaagcccattagggttactatccttcctatatttagtgtttttgacacactatccaa 39643334  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 14101144 - 14101283
Alignment:
Q  99 tttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgggcctt-atattaggtctttaatcttaaacc-catcaggatt 196  Q
    |||||||||| | || |||||||||||||  ||||||| || | |||||| ||||||||||||| | ||||||| |||| |||| |  | ||| ||| ||    
T  14101144 tttagtttaaaagtataattatattagtttgtctttcaattga-gttgtttttagttgggcctttaaattaggtttttagtctttaggctcattagggtt 14101242  T
Q  197 actatccttcttatatatagggtctttgacacactatccaa 237  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  14101243 actatcctttctatatatagtgtctttgacacactatccaa 14101283  T

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Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 3223143 - 3222965
Alignment:
Q  58 tgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgg 157  Q
    ||||||||||| | ||||||||||||| ||| |||||  |||||||||||||| ||||||||||||||||  || |||  ||| |||||||| |||||||    
T  3223143 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtccttct-tttgagttgttgctagttgg 3223045  T
Q  158 gccttatattaggtctttaatcttaaacccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    ||||||  ||||||||||| |||||| ||||| ||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  3223044 gccttaagttaggtctttagtcttaagcccattagggttaccatccttcctatatatagtgtctttgacacactatccaa 3222965  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 26542552 - 26542374
Alignment:
Q  58 tgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgg 157  Q
    ||||| ||||||| ||||  | ||||| ||| ||||| ||||||||||| ||| ||||||||||||||||  || ||||||||| ||||||| |||||||    
T  26542552 tgttaaagagtgatattacgcctaaatgaataatttagttatttagtttcagagtaaaattatattagtttgtccttcacttta-gttgttgctagttgg 26542454  T
Q  158 gccttatattaggtctttaatcttaaacccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    |||||| |||||||||||| ||| || || || | | |||||||  ||||||||||||| ||||||||||||||||||||    
T  26542453 gccttaaattaggtctttagtctcaagccgattaaggttactatgtttcttatatatagtgtctttgacacactatccaa 26542374  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 1796904 - 1796968
Alignment:
Q  57 atgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatat 122  Q
    |||||||||||||| |||||||| ||||||||||||||  |||||||||| ||| |||||||||||    
T  1796904 atgttagagagtgatattagactcaaataaatgatttaactatttagttt-agagtaaaattatat 1796968  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 237
Target Start/End: Original strand, 21045728 - 21045909
Alignment:
Q  59 gttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaatta---tattagttgatctttcactttaagttgttgttagtt 155  Q
    ||||||||||||||||||||||||||||||||| |   ||| |||||||||| ||||||||   ||||||||  |||||| | || |||||||| | |||    
T  21045728 gttagagagtgaaattagacttaaataaatgatgttgatatctagtttaagagtaaaattatactattagtttgtctttcgc-ttgagttgttgctcgtt 21045826  T
Q  156 gggccttatattaggtctttaatc-ttaaacccatcaggattactatccttcttatatatagggtctttgacacactatccaa 237  Q
    || |||||  |||||||| || || |||  ||||| ||| |||| ||| ||| ||||||||| || |||||||||||||||||    
T  21045827 ggaccttaagttaggtctgtagtctttaggcccattagggttacgatcattcctatatatagtgtttttgacacactatccaa 21045909  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 6889394 - 6889498
Alignment:
Q  57 atgttagagagtgaaattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttg 156  Q
    ||||||||||||| || |||||| |||||||| |||||  |||||||||||  | ||||||||| ||||||  |||||| |||| |||||||||||||||    
T  6889394 atgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttc-ctttgagttgttgttagttg 6889492  T
Q  157 ggcctt 162  Q
    | ||||    
T  6889493 gacctt 6889498  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 27065614 - 27065694
Alignment:
Q  81 aaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgggcctt 162  Q
    |||||||| |||||  |||||| ||||  | |||||||||||||||| |||||| | ||| |||||||| ||||||||||||    
T  27065614 aaataaataatttagatatttaatttataagtaaaattatattagtttatctttta-tttgagttgttgctagttgggcctt 27065694  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 27086717 - 27086797
Alignment:
Q  81 aaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagttgggcctt 162  Q
    |||||||| |||||  |||||| ||||  | |||||||||||||||| |||||| | ||| |||||||| ||||||||||||    
T  27086717 aaataaataatttagatatttaatttataagtaaaattatattagtttatctttta-tttgagttgttgctagttgggcctt 27086797  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 22708 - 22791
Alignment:
Q  71 aattagacttaaataaatgatttatttatttagtttaagaataaaattatattagttgatctttcactttaagttgttgttagtt 155  Q
    ||||||||||||||||||||||||  |||| ||||||  | ||||||||| |||||   |||||| |||||| ||||| ||||||    
T  22708 aattagacttaaataaatgatttagatattaagtttataagtaaaattattttagtctgtctttc-ctttaaattgtttttagtt 22791  T

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