View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_high_8 (Length: 239)
Name: NF2481_high_8
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_high_8 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13854418 - 13854657
Alignment:
| Q |
1 |
aaaattatcactgatgtcgatgtgtcagtgtcatgttcagtgtttgtgtcagtgcttcgcaggtgatgaaaacattgagatatagataaaa-aatacact |
99 |
Q |
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| T |
13854418 |
aaaattatcaccgatgtcgatgtgtcagtgtcatgttcagtgtttgtgtcagtgcttcactggtgatgaaaacattgagaaatagataaaaaaatacact |
13854517 |
T |
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| Q |
100 |
taatacaagaatgagatggtaaactaatagaactttactaaaataacaaaatgaacggtgggagaatcacaccttctctatgagatcaagaacatcttga |
199 |
Q |
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| T |
13854518 |
taatacaagaatgggatggtaaactgatagaactttactaaaataacaaaatgaacggtgggagaatcacaccttctctatgagatcaagaacatcttga |
13854617 |
T |
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| Q |
200 |
ttatcaacaaactcgatataactccaatcaatctcttcct |
239 |
Q |
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| T |
13854618 |
ttatcaacaaactcgatataactccaatcaatctcttcct |
13854657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 29900176 - 29900240
Alignment:
| Q |
170 |
accttctctatgagatcaagaacatcttgattatcaacaaactcgatataactccaatcaatctc |
234 |
Q |
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| T |
29900176 |
accttttcaatgagatccaaaatatcttgattgtcaacaaattcaatgtaactccaatcaatctc |
29900240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 34392328 - 34392279
Alignment:
| Q |
190 |
aacatcttgattatcaacaaactcgatataactccaatcaatctcttcct |
239 |
Q |
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| T |
34392328 |
aacatattgattatcaacgaactcgatataactccaatcaatctcttcct |
34392279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 26466860 - 26466799
Alignment:
| Q |
170 |
accttctctatgagatcaagaacatcttgattatcaacaaactcgatataactccaatcaat |
231 |
Q |
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| T |
26466860 |
accttctcaataagatcaagaacatcctgattatccacaaattctacatagctccaatcaat |
26466799 |
T |
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