View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_low_16 (Length: 214)
Name: NF2481_low_16
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 45175346 - 45175527
Alignment:
| Q |
16 |
aatatcaggatgtctgagcaagcgcaagagcttgatttctcttaggatacgggtggcgtcagatacatgctcaaaaacatggttaattttcttgatagca |
115 |
Q |
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| T |
45175346 |
aatatcaggatgcctgagcaagcgcaagagcttgatttctcttaggatacgggtggcgtcagatacatgctcaaaaacatggttaattttcttgatagca |
45175445 |
T |
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| Q |
116 |
actttttggccagtatgagtgtcaattgcagaacagacaacaccataacttccttttccaatgatttcttggacctggtatt |
197 |
Q |
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| T |
45175446 |
actttttggccagtatgagtgtcaattgcagaacagacaacaccataacttccttttccaatgatttcttggacctggtatt |
45175527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 45182179 - 45182279
Alignment:
| Q |
82 |
atgctcaaaaacatggttaattttcttgatagcaactttttggccagtatgagtgtcaattgcagaacagacaacaccataacttccttttccaatgatt |
181 |
Q |
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| T |
45182179 |
atgctcaaaaacattgttgattttcttgatagcaacttttttattagtaagagtgtcgattgcagagctgacaacaccataacttccttttccaatgatt |
45182278 |
T |
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| Q |
182 |
t |
182 |
Q |
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| T |
45182279 |
t |
45182279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 16270585 - 16270527
Alignment:
| Q |
128 |
gtatgagtgtcaattgcagaacagacaacaccataacttccttttccaatgatttcttg |
186 |
Q |
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| T |
16270585 |
gtatgagtgtcaatggccgaacagacaacaccgtaacttcctttcccaatgacttcttg |
16270527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 29962515 - 29962693
Alignment:
| Q |
17 |
atatcaggatgtctgagcaagcgcaagagcttgatttctcttaggatacgggtggcgtcagatacatgctcaaaaacatggttaattttcttgatagcaa |
116 |
Q |
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| T |
29962515 |
atatcaggatgtcgtagcaaacgaaggagtttaatttctcttagtatccgtgtggcatccgatacatgctcaaaaacatcattgatttttttaattgcaa |
29962614 |
T |
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| Q |
117 |
ctttttggccagtatgagtgtcaattgcagaacagacaacaccataacttccttttccaatgatttcttggacctggta |
195 |
Q |
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| T |
29962615 |
ctttttccccagaaatagtatccacggcagaaaccactacaccgtaacttccttttccaaccacttcttggacttggta |
29962693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 7253311 - 7253420
Alignment:
| Q |
68 |
gtggcgtcagatacatgctcaaaaacatggttaattttcttgatagcaactttttggccagtatgagtgtcaattgcagaacagacaacaccataacttc |
167 |
Q |
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||||| ||||||||||| ||||| | | || |||||||| |||||||| |||| |||||||| || ||| ||| ||||| ||||||||||| |||| |
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| T |
7253311 |
gtggcatcagatacatgttcaaatatgtcattgattttctttatagcaaccttttctccagtatgtgtatcatatgctgaacaaacaacaccatagcttc |
7253410 |
T |
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| Q |
168 |
cttttccaat |
177 |
Q |
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| T |
7253411 |
ctttaccaat |
7253420 |
T |
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