View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2481_low_17 (Length: 212)

Name: NF2481_low_17
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2481_low_17
NF2481_low_17
[»] chr4 (13 HSPs)
chr4 (1-201)||(39051067-39051268)
chr4 (118-163)||(13302236-13302281)
chr4 (64-160)||(54090997-54091100)
chr4 (118-163)||(13432688-13432733)
chr4 (33-102)||(39051269-39051336)
chr4 (14-161)||(44137393-44137547)
chr4 (119-163)||(39493626-39493670)
chr4 (118-182)||(13302114-13302184)
chr4 (33-108)||(49448196-49448271)
chr4 (33-108)||(53924448-53924523)
chr4 (33-108)||(54458707-54458782)
chr4 (114-163)||(13432781-13432830)
chr4 (76-108)||(13119364-13119396)
[»] chr3 (16 HSPs)
chr3 (13-161)||(47337224-47337374)
chr3 (7-108)||(20124074-20124176)
chr3 (5-130)||(1163420-1163553)
chr3 (33-182)||(40472813-40472969)
chr3 (14-164)||(33429039-33429197)
chr3 (15-163)||(16298194-16298350)
chr3 (33-102)||(11413150-11413219)
chr3 (83-163)||(40860947-40861028)
chr3 (65-152)||(29504872-29504966)
chr3 (70-163)||(39840661-39840760)
chr3 (53-163)||(33075229-33075346)
chr3 (108-163)||(49547724-49547779)
chr3 (109-163)||(45965675-45965729)
chr3 (108-161)||(45965826-45965879)
chr3 (108-164)||(3910232-3910288)
chr3 (113-161)||(49547592-49547640)
[»] chr8 (10 HSPs)
chr8 (33-164)||(33229496-33229628)
chr8 (5-80)||(29490517-29490595)
chr8 (109-163)||(5840355-5840409)
chr8 (106-161)||(29490376-29490431)
chr8 (5-159)||(32029411-32029572)
chr8 (33-157)||(41687771-41687897)
chr8 (109-181)||(10028629-10028707)
chr8 (109-156)||(21136596-21136643)
chr8 (109-163)||(10028897-10028951)
chr8 (33-102)||(29490443-29490512)
[»] chr7 (11 HSPs)
chr7 (33-164)||(10524983-10525115)
chr7 (33-108)||(32296359-32296434)
chr7 (121-164)||(16808055-16808098)
chr7 (107-158)||(41008801-41008852)
chr7 (109-163)||(12427835-12427889)
chr7 (10-130)||(33384106-33384233)
chr7 (87-161)||(41008916-41008997)
chr7 (109-163)||(43669488-43669540)
chr7 (118-163)||(16810450-16810495)
chr7 (64-108)||(16810516-16810559)
chr7 (120-164)||(24451952-24451996)
[»] chr2 (10 HSPs)
chr2 (5-161)||(32502957-32503121)
chr2 (13-157)||(17658784-17658936)
chr2 (109-162)||(22191537-22191590)
chr2 (13-108)||(8033614-8033710)
chr2 (13-104)||(8033720-8033812)
chr2 (62-108)||(22191446-22191492)
chr2 (71-164)||(39760359-39760459)
chr2 (36-108)||(32502886-32502958)
chr2 (65-161)||(33940009-33940112)
chr2 (109-157)||(17672952-17673000)
[»] chr1 (12 HSPs)
chr1 (64-163)||(40649779-40649885)
chr1 (109-164)||(38783893-38783948)
chr1 (14-163)||(8792969-8793126)
chr1 (36-100)||(845062-845126)
chr1 (33-109)||(30570167-30570243)
chr1 (33-108)||(7790344-7790419)
chr1 (64-149)||(15395209-15395301)
chr1 (118-164)||(38576575-38576621)
chr1 (14-93)||(23399680-23399758)
chr1 (33-89)||(12951699-12951755)
chr1 (109-163)||(10377569-10377623)
chr1 (109-163)||(28504713-28504767)
[»] chr6 (14 HSPs)
chr6 (12-163)||(21394256-21394424)
chr6 (12-164)||(8592162-8592320)
chr6 (35-124)||(21394407-21394496)
chr6 (33-93)||(17437677-17437737)
chr6 (107-164)||(19122006-19122063)
chr6 (108-161)||(26330338-26330391)
chr6 (35-108)||(32520096-32520169)
chr6 (33-109)||(20832519-20832595)
chr6 (33-108)||(3889973-3890048)
chr6 (109-156)||(16710444-16710491)
chr6 (70-164)||(21969251-21969352)
chr6 (13-102)||(32519993-32520083)
chr6 (107-163)||(19121856-19121912)
chr6 (34-102)||(23765853-23765921)
[»] chr5 (10 HSPs)
chr5 (14-163)||(39643020-39643177)
chr5 (73-149)||(8285218-8285301)
chr5 (64-147)||(1862345-1862429)
chr5 (33-109)||(9900269-9900345)
chr5 (14-159)||(36184522-36184675)
chr5 (65-163)||(12640184-12640288)
chr5 (109-164)||(20399029-20399084)
chr5 (5-149)||(8839931-8840083)
chr5 (33-152)||(4902256-4902377)
chr5 (107-163)||(11275809-11275865)
[»] scaffold0154 (2 HSPs)
scaffold0154 (83-161)||(6210-6295)
scaffold0154 (5-93)||(6064-6153)
[»] scaffold0050 (2 HSPs)
scaffold0050 (7-80)||(82104-82178)
scaffold0050 (118-161)||(81970-82013)
[»] scaffold0360 (1 HSPs)
scaffold0360 (109-163)||(4796-4850)
[»] scaffold0198 (2 HSPs)
scaffold0198 (117-163)||(11542-11588)
scaffold0198 (117-163)||(11907-11953)
[»] scaffold0066 (3 HSPs)
scaffold0066 (106-161)||(11992-12047)
scaffold0066 (60-161)||(12080-12186)
scaffold0066 (60-96)||(13899-13935)
[»] scaffold0340 (1 HSPs)
scaffold0340 (107-164)||(10874-10931)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 39051268 - 39051067
Alignment:
Q  1 gatcaagacagagactattttgaaatattatcaaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39051268 gatcaagacagagactattttgaaatattatcaaagtttctcaactagatctctgtctatatatttttgtcacatgacgagtgacttaattgagaaactt 39051169  T
Q  101 ttaacaaa-actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttc 199  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051168 ttaacaaagactattttaaaatattaatagaatcaatgactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttc 39051069  T
Q  200 at 201  Q
    ||    
T  39051068 at 39051067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 13302236 - 13302281
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  13302236 aaatattaatagaatcgaggactaatttgagagtgacttacaaaga 13302281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 54090997 - 54091100
Alignment:
Q  64 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgactt 156  Q
    |||||||||||||||||| ||| |||||||||||||||  |||||       |||| |||||||||||||| || |||| ||||||||||||| ||||||    
T  54090997 tttttgtcacatgacgagggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaatgactt 54091096  T
Q  157 acaa 160  Q
    ||||    
T  54091097 acaa 54091100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 13432733 - 13432688
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  13432733 aaatattaatagaatcgaggactaatttgagagttacttacaaaga 13432688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 39051336 - 39051269
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 102  Q
    |||||||||||| |||||| |||||| ||| |||||||| |||||| |  ||||||||||||||||||||    
T  39051336 aaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaactttt 39051269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 44137547 - 44137393
Alignment:
Q  14 actattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa---- 108  Q
    |||||||||||||||| ||||| ||||||||| ||||  | ||| | ||| ||||| ||||| || ||| ||||||||||| ||| |||| |||||        
T  44137547 actattttgaaatattgtcaaaagtttctcaattagacttatgtttctatgttttt-tcacacgatgagagacttaattgataaatttttgacaaagaca 44137449  T
Q  109 ---actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
       |||||||| ||||||||||||| |||  ||||||||||||| | |||||||||    
T  44137448 gatactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaa 44137393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 39493670 - 39493626
Alignment:
Q  119 aatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||    
T  39493670 aatattaataaaatcaacgactaatttgaaagtgacttacaaaga 39493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 13302184 - 13302114
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaa------gatcaatttggtggtttactc 182  Q
    |||| ||||||||| || |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  13302184 aaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtttactc 13302114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 49448196 - 49448271
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||| ||||||  ||||| ||| ||||||||| |||||||| ||  ||||||| |||||||| |||||    
T  49448196 aaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaa 49448271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 53924523 - 53924448
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||||| |||| |||||| |||||| ||| |||||||||||||  |||  || |||||||||||||||| |||||    
T  53924523 aaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaa 53924448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 54458707 - 54458782
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||| |||||| ||||||  || |||||||||||| ||||| ||| |||| |||| |||||| |||||    
T  54458707 aaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaa 54458782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 13432781 - 13432830
Alignment:
Q  114 tttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||| ||||||||| ||  ||||||||||||| |||||||||||||    
T  13432781 tttaaaatgttaatagaagcatagactaatttgagaatgacttacaaaga 13432830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 13119364 - 13119396
Alignment:
Q  76 gacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||| ||||||||||||||||||||||||||    
T  13119364 gacgagggacttaattgagaaacttttaacaaa 13119396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 47337224 - 47337374
Alignment:
Q  13 gactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-ac 110  Q
    ||||||||||||||||| ||||| |||| |||| ||||||  ||||| ||| ||||||||| || ||||| |||||||||||||||||||| ||||| ||    
T  47337224 gactattttgaaatattgtcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaacttttgacaaatac 47337323  T
Q  111 tattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    |||||| || |||||||||| ||| | ||||||||||||||||||| ||||    
T  47337324 tattttgaattattaatagagtcaggaactaatttgagagtgactttcaaa 47337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 20124176 - 20124074
Alignment:
Q  7 gacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaac 105  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||| ||||||  || ||||||| |||||||||| |||||||||||||||||||| ||    
T  20124176 gacagagactattttgaaatatagtcaaaagtttctcaactagatcattgtcttgatgtttttgttacatgacgagagacttaattgagaaacttttgac 20124077  T
Q  106 aaa 108  Q
    |||    
T  20124076 aaa 20124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 1163553 - 1163420
Alignment:
Q  5 aagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttta 103  Q
    |||||| |||||| ||||||||| | ||||| |||| |||| |||| || ||| | ||||||||| |||||||||||| ||||||||||||||||||||     
T  1163553 aagacatagactactttgaaatactgtcaaaagtttttcaattagacctatgtttctatatttttttcacatgacgagagacttaattgagaaacttttg 1163454  T
Q  104 aca-------aaactattttaaaatattaataga 130  Q
    |||       ||||||||||||||||||||||||    
T  1163453 acaaacacataaactattttaaaatattaataga 1163420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 40472969 - 40472813
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatatta 125  Q
    |||||||||||| ||| | | ||||| ||| |||||||||||  | ||| ||| |||| ||||||||||| |||||       |||| |||||||| |||    
T  40472969 aaagtttctcaattaggtatatgtctttatgtttttgtcacacaatgagggacctaatcgagaaacttttgacaaagaaataaactagtttaaaatttta 40472870  T
Q  126 atagaatcaaggactaatttgagagtgacttacaaagatcaatttggtggtttactc 182  Q
    ||||| |||| ||||||||||||||| |||||||||||  |||||| ||||||||||    
T  40472869 atagagtcaaagactaatttgagagtaacttacaaagactaatttgctggtttactc 40472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 33429039 - 33429197
Alignment:
Q  14 actattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa---- 108  Q
    |||||||||||||||| ||||| ||||||||| |||||   | ||| | | |||||||||||||||||  ||||||||||| |||||||| | |||        
T  33429039 actattttgaaatattgtcaaatgtttctcaattagattcatttctctttgtttttgtcacatgacgaaagacttaattgaaaaacttttgataaagata 33429138  T
Q  109 ---actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
       | |||||||||||||||||||| |  | ||||||||||| ||||||||||||||||    
T  33429139 ttgattattttaaaatattaatagagttgatgactaatttgaaagtgacttacaaagat 33429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 16298350 - 16298194
Alignment:
Q  15 ctattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa----- 108  Q
    ||||||| ||||||| || ||||||| |||| ||||||  ||||| ||||||||||||| |||| ||| || ||||||||||| | ||| |||||         
T  16298350 ctattttaaaatattgtccaaagtttttcaattagatcaatgtctctatatttttgtcatatgatgagggatttaattgagaatcatttgacaaacacag 16298251  T
Q  109 --actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
      | |||||||||||||||||| | ||  |||||| |||||||||||||||||||||    
T  16298250 agattattttaaaatattaataaagtcgtggactagtttgagagtgacttacaaaga 16298194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 11413219 - 11413150
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 102  Q
    |||||||||||| |||||||||||||  || ||||| |||||||||||| | ||||||||||||||||||    
T  11413219 aaagtttctcaattagatctttgtcttaatgtttttatcacatgacgaggggcttaattgagaaactttt 11413150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 40860947 - 40861028
Alignment:
Q  83 gacttaattgagaaacttttaacaaa-actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||| |||||  |||||| || ||| |||||||||||||    
T  40860947 gacttaattgagaaacttttgacaaagactaatttgaaatattaataaaatcagagactaaattaagaatgacttacaaaga 40861028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 29504872 - 29504966
Alignment:
Q  65 ttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtg 152  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||       |||| ||||||||||||||||| |  ||||||||||||||||||    
T  29504872 ttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagtttaaaatattaatagagttgaggactaatttgagagtg 29504966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 39840760 - 39840661
Alignment:
Q  70 tcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 162  Q
    |||||||||||| |||||| ||||||||||||| ||||||       ||||||| ||||||||||||| |||  ||||||||||||| | ||||||||||    
T  39840760 tcacatgacgagggactta-ttgagaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaag 39840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 33075229 - 33075346
Alignment:
Q  53 ttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaattt 145  Q
    |||||| |||||||||||||  ||||||| ||  ||||||| ||| |||| ||||||       ||| ||||||||||||||||| | || || ||||||    
T  33075229 ttgtctttatatttttgtcatgtgacgagagatataattgataaatttttgacaaaaacaatgactaatttaaaatattaatagatttaatgattaattt 33075328  T
Q  146 gagagtgacttacaaaga 163  Q
    |||||||||||| |||||    
T  33075329 gagagtgacttataaaga 33075346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 49547724 - 49547779
Alignment:
Q  108 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||| ||| ||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  49547724 aactagtttgaaatattaatataatcatggactaatttgagagtgatgtacaaaga 49547779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 45965729 - 45965675
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||| || |||||||||||||||||  || ||||||||||| ||||||||||||    
T  45965729 actatattgaaatattaatagaatcagagattaatttgagagcgacttacaaaga 45965675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 45965826 - 45965879
Alignment:
Q  108 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||| ||| ||||||||||||| |||   ||||||||||||||||||||||||    
T  45965826 aactagtttgaaatattaatagagtcacaaactaatttgagagtgacttacaaa 45965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 3910288 - 3910232
Alignment:
Q  108 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    ||||| ||||||||||||||||| | | ||||||||||||||||  |||||| ||||    
T  3910288 aactagtttaaaatattaatagagttagggactaatttgagagtagcttacagagat 3910232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 49547640 - 49547592
Alignment:
Q  113 ttttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    |||||||||||||||||| |||| || |||||||||| ||| |||||||    
T  49547640 ttttaaaatattaatagagtcaatgattaatttgagaatgatttacaaa 49547592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 33229628 - 33229496
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 131  Q
    |||||||||||| ||||||  ||||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| |||| ||| ||||||||||||      
T  33229628 aaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaagactagtttgaaatattaataggg 33229529  T
Q  132 tcaaggactaatttgagagtgacttacaaagat 164  Q
    |   ||||||||||||||| |||||||||||||    
T  33229528 ttggggactaatttgagagcgacttacaaagat 33229496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 29490517 - 29490595
Alignment:
Q  5 aagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatata--tttttgtcacatgacga 80  Q
    |||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  29490517 aagatagacactattttgaaatattatcaaaagtttctcaattagatctttgtctatatatgtttttgtcacacgacga 29490595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 5840409 - 5840355
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  5840409 actattttaaaatattaatagaatcagagactaatttgagagtaacttacaaaga 5840355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 29490431 - 29490376
Alignment:
Q  106 aaaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||||||||||||| |||||  ||||||||||| |||||||||||||    
T  29490431 aaaactattttaaaatattaatataatcatagactaatttgatagtgacttacaaa 29490376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 32029572 - 32029411
Alignment:
Q  5 aagacagagactattttgaaatattatca-aagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttta 103  Q
    |||||| ||||||||||||||||||  || ||||||||||| || | |  ||| | ||| ||||| | |||||||||| ||||||||||| |||||||||    
T  32029572 aagacatagactattttgaaatattggcagaagtttctcaattataaccatgtttctatgttttttttacatgacgagggacttaattgaaaaactttta 32029473  T
Q  104 acaaa------actattttaaaatattaatagaatcaaggactaatttgagagtgacttaca 159  Q
    |||||      |||||||| ||||||||| ||| |||  || |||||||||| | |||||||    
T  32029472 acaaagataagactattttgaaatattaacagagtcagagattaatttgagaatcacttaca 32029411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 41687771 - 41687897
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaa-cttttaacaaaa-ctattttaaaatattaataga 130  Q
    |||||||||||| ||| | ||| ||| ||| ||||||||||| | |||  ||||||||||| ||| ||||||| |||| ||| ||| |||||||||||||    
T  41687771 aaagtttctcaattaggtttttatctttatgtttttgtcacaaggcgaaagacttaattgaaaaatcttttaataaaaactagtttgaaatattaataga 41687870  T
Q  131 atcaaggactaatttgagagtgactta 157  Q
     |||   ||||||||||||||||||||    
T  41687871 gtcacaaactaatttgagagtgactta 41687897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 10028707 - 10028629
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa------gatcaatttggtggtttact 181  Q
    |||| ||| ||||||||||||| |||  ||||||||||||| |||||||||||      ||||||||||||||||||||    
T  10028707 actaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtttact 10028629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 21136643 - 21136596
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgactt 156  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||    
T  21136643 actattttgaaatattaatagagtcaaagactaatttgagaatgactt 21136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 10028897 - 10028951
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||| ||| ||||||||||| | |||| |||||||||||||||||| ||||||||    
T  10028897 actagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaaga 10028951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 29490443 - 29490512
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 102  Q
    |||||||||||| ||||||| ||||| | | |||||| |||||||||||  | ||| |||||||||||||    
T  29490443 aaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaactttt 29490512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 10524983 - 10525115
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 131  Q
    |||||||||||| ||||||  | ||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| |||| ||| ||||||||||||      
T  10524983 aaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaagactagtttgaaatattaataggg 10525082  T
Q  132 tcaaggactaatttgagagtgacttacaaagat 164  Q
    ||  |||| ||||||||||||||||||||||||    
T  10525083 tcggggacaaatttgagagtgacttacaaagat 10525115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 32296434 - 32296359
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||||| |||| |||||| |||||| ||| ||||||||||| || || ||| |||||||||||||||||||||||    
T  32296434 aaagtttttcaattagatcattgtctctatgtttttgtcacacgatgaatgatttaattgagaaacttttaacaaa 32296359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 16808098 - 16808055
Alignment:
Q  121 tattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16808098 tattaatagaatcgaggactaatttgagagttacttacaaagat 16808055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 41008852 - 41008801
Alignment:
Q  107 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttac 158  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  41008852 aaactattttaaaatattaatagaatcacagactagtttgagaatgacttac 41008801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 12427889 - 12427835
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||    
T  12427889 actaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaaga 12427835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 33384233 - 33384106
Alignment:
Q  10 agagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||||||||||| | ||| ||||||| | |||||   ||| | ||| ||||| |||||||| || |||||||||||||||||||||||| ||    
T  33384233 agagactattttgaaatattgttaaaagtttctcgattagattcatgttt-tatgtttttatcacatgatgaatgacttaattgagaaacttttaacgaa 33384135  T
Q  109 -------actattttaaaatattaataga 130  Q
           ||||||||||||||||||||||    
T  33384134 gacatagactattttaaaatattaataga 33384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 41008916 - 41008997
Alignment:
Q  87 taattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||||||||||||       |||||||||||||||||||||| |||  || |||||||| | |||||||||||    
T  41008916 taattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgacttacaaa 41008997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 43669488 - 43669540
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||||||||||||||||||| |||  ||||||||||| |||| ||||||||||    
T  43669488 actattttaaaatattaatagagtca--gactaatttgaaagtggcttacaaaga 43669540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 16810495 - 16810450
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||| | ||  ||||||||||||||||||||||||||||    
T  16810495 aaatattaatatagtcggggactaatttgagagtgacttacaaaga 16810450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 16810559 - 16810516
Alignment:
Q  64 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||    
T  16810559 tttttgtcacatgacga-tgacctaattgagaaacttttgacaaa 16810516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 24451952 - 24451996
Alignment:
Q  120 atattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  24451952 atattaatagagtcagggattaatttgagagtggcttacaaagat 24451996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 32502957 - 32503121
Alignment:
Q  5 aagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttta 103  Q
    |||||| |||||||||||||||||||||||| |||| |||| ||||||| ||||| ||| ||||| ||| |||||||| |||||||||||||| |||||     
T  32502957 aagacaaagactattttgaaatattatcaaaagtttatcaattagatctctgtctctatgtttttatcatatgacgagggacttaattgagaatcttttg 32503056  T
Q  104 acaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    |||||       ||||||||||||||| |||||| |    ||||||||||| | |||||||||||    
T  32503057 acaaagacaatgactattttaaaatatcaatagagtgtgagactaatttgataatgacttacaaa 32503121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 17658936 - 17658784
Alignment:
Q  13 gactattttgaaatattatcaaagt-ttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa--- 108  Q
    ||||||||||||||||| ||||| | || |||| |||||| || ||| | | |||||||||||||||||| ||||||||||||||| |||| |||||       
T  17658936 gactattttgaaatattgtcaaaatcttttcaattagatcattttctctttgtttttgtcacatgacgagagacttaattgagaaatttttgacaaagac 17658837  T
Q  109 ----actattttaaaatattaatagaatcaaggactaatttgagagtgactta 157  Q
        |||||||| ||||||||||||| |   |||||||||||| |||||||||    
T  17658836 aatgactattttgaaatattaatagagttggggactaatttgatagtgactta 17658784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 22191537 - 22191590
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 162  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  22191537 actattttaaaatattaatagagtcagggactaatttgagagtgacttacaaag 22191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 8033710 - 8033614
Alignment:
Q  13 gactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||||||| ||| ||| ||||| |||| |||| |||||   ||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  8033710 gactattttaaaagattgtcaaaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaa 8033614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 8033812 - 8033720
Alignment:
Q  13 gactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaa 104  Q
    ||||||||||||| ||| ||||| ||||||||| |  |||| ||||| |||  |||||||| |||||||| ||||||||||||||||||||||    
T  8033812 gactattttgaaagattgtcaaaagtttctcaattcaatctatgtctctatgattttgtcatatgacgagagacttaattgagaaacttttaa 8033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 22191492 - 22191446
Alignment:
Q  62 tatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||    
T  22191492 tatttttgtcacatgacgagggacttaatagagaaacttttgacaaa 22191446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 39760359 - 39760459
Alignment:
Q  71 cacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||| ||||||||||||| | |||| |||||       |||||||| ||||||||||| | ||| |||||||||||||| | |||||||||||    
T  39760359 cacatgacgagggacttaattgagagatttttgacaaagatatgaactattttgaaatattaatatagtcatggactaatttgagaatcacttacaaaga 39760458  T
Q  164 t 164  Q
    |    
T  39760459 t 39760459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 32502886 - 32502958
Alignment:
Q  36 gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||||||| |||||| |||||| ||| ||||||||||||||||||  | |||||||| ||| |||| |||||    
T  32502886 gtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaattttgacaaa 32502958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 33940009 - 33940112
Alignment:
Q  65 ttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtgactta 157  Q
    |||| |||||||  ||| |||||||||||||||||||| | ||||       ||||||| ||||||||||| | |||| ||||||||||||| | |||||    
T  33940009 ttttttcacatgtggagggacttaattgagaaacttttgaaaaaaacagtgactattttgaaatattaataaagtcaacgactaatttgagaatcactta 33940108  T
Q  158 caaa 161  Q
    ||||    
T  33940109 caaa 33940112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 17673000 - 17672952
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgactta 157  Q
    |||||||| |||||||||||||||    |||||||||||||||||||||    
T  17673000 actattttgaaatattaatagaattggagactaatttgagagtgactta 17672952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 40649885 - 40649779
Alignment:
Q  64 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgactt 156  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||       || ||||| ||||||||||||||| ||| |||||||||||| | ||||    
T  40649885 tttttttcacatgacgagggacttaattgagaaacttttaacaaagacatgtaccattttgaaatattaatagaattaagaactaatttgagaatcactt 40649786  T
Q  157 acaaaga 163  Q
    |||||||    
T  40649785 acaaaga 40649779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 38783948 - 38783893
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  38783948 actattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaagat 38783893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 8793126 - 8792969
Alignment:
Q  14 actattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaacta 112  Q
    |||||||||||||||||||||| ||||||||| || |||  | | | | | |||||||||||||||||  ||||||||||||||   |||||||||| ||    
T  8793126 actattttgaaatattatcaaaagtttctcaattatatccctttttctttgtttttgtcacatgacgaaggacttaattgagaattctttaacaaaagta 8793027  T
Q  113 -------ttttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
           |||| ||||||||||||| |    |||||||||||||||||||||||||||    
T  8793026 aagattattttgaaatattaatagagttggagactaatttgagagtgacttacaaaga 8792969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 845062 - 845126
Alignment:
Q  36 gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactt 100  Q
    ||||||||| | ||||||||||| ||| |||||||||||||| |||  |||||||||||||||||    
T  845062 gtttctcaattggatctttgtctctatgtttttgtcacatgatgagacacttaattgagaaactt 845126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 30570243 - 30570167
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 109  Q
    ||||||| |||| ||||||  ||||| ||| ||||||||| || |||| ||||||||||||||||||||| ||||||    
T  30570243 aaagtttatcaattagatcgctgtctttatgtttttgtcatataacgaatgacttaattgagaaacttttgacaaaa 30570167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 7790419 - 7790344
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||| ||| |||| |||| | |||||||| |||||    
T  7790419 aaagtttctcaattaggtctttgtcattatatttttgtcacatgatgagggactaaattaaaaaacttttgacaaa 7790344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 15395301 - 15395209
Alignment:
Q  64 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgaga 149  Q
    ||||| |||||| ||||| ||||||||||||||  ||||||||||       |||||||||||||||||||||| |||  |||||||||||||    
T  15395301 tttttttcacataacgagggacttaattgagaattttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 38576621 - 38576575
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  38576621 aaatattaatagaatcaaagactaatttgagaatgatttacaaagat 38576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 23399680 - 23399758
Alignment:
Q  14 actattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattga 93  Q
    |||||||||||||||||||||| ||||| ||| |||| || | ||||| |  |||||||||||||||| ||||||||||||    
T  23399680 actattttgaaatattatcaaaagtttcacaattagacctctctctatgt--ttttgtcacatgacgattgacttaattga 23399758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 12951755 - 12951699
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaa 89  Q
    |||||||||||| |||||| | ||||  ||||||||||| |||||||||||||||||    
T  12951755 aaagtttctcaattagatcatagtctcaatatttttgtcgcatgacgagtgacttaa 12951699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 10377569 - 10377623
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||| ||| ||||||||||||| |||| ||||||||||| | |||||||||||||    
T  10377569 actaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaaga 10377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 28504767 - 28504713
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||| ||| ||||||||||||| |||  ||||||||||||| |||||||||||||    
T  28504767 actagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaaga 28504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 21394424 - 21394256
Alignment:
Q  12 agactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-- 108  Q
    |||||||||||||||||| ||||| ||||||||| || |||  |||||   | |||||||||||||||||| ||| |||||||||||||||| |||||      
T  21394424 agactattttgaaatattgtcaaaagtttctcaattacatcactgtctcggtctttttgtcacatgacgagggacataattgagaaacttttgacaaaag 21394325  T
Q  109 --------------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
                  |||||||||||||||||||||| | || |||||||||||||||| ||||||||||    
T  21394324 agagagagagagagactattttaaaatattaatagagttaatgactaatttgagagtggcttacaaaga 21394256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 8592162 - 8592320
Alignment:
Q  12 agactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-- 108  Q
    ||||||||||||||||||| |||| |||| || | |||||||| |||| ||| ||||||||| |||||||  ||||||||||| |||||||| |||||      
T  8592162 agactattttgaaatattagcaaaagtttttcgattagatctt-gtctctatgtttttgtcatatgacgatggacttaattgaaaaacttttgacaaaga 8592260  T
Q  109 ----actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
        | ||||||||||| ||||| || |||   |||||||| ||||||||| ||||||||    
T  8592261 taagattattttaaaatgttaattgagtcagaaactaatttaagagtgactcacaaagat 8592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 21394496 - 21394407
Alignment:
Q  35 agtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatatt 124  Q
    |||||||||| ||||||  | ||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||| |||||||| |||||||    
T  21394496 agtttctcaattagatccct-tctctatgtttttatcacatgacgaggtacttaattgagaaacttttaacaaagactattttgaaatatt 21394407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 17437737 - 17437677
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattga 93  Q
    |||||||||||| ||||||||||||| ||| |||||||||||| | ||| |||||||||||    
T  17437737 aaagtttctcaattagatctttgtctctatgtttttgtcacataaggagggacttaattga 17437677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 19122006 - 19122063
Alignment:
Q  107 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    |||||| ||| ||||||||||||| |||  ||||||||||| ||||||||||||||||    
T  19122006 aaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaagat 19122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 26330338 - 26330391
Alignment:
Q  108 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||||||||||||| |||| ||||||||||| | | |||||||||    
T  26330338 aactattttaaaatattaatagagtcaatgactaatttgataatcacttacaaa 26330391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 32520169 - 32520096
Alignment:
Q  35 agtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    ||||| |||| || |||||| ||| | ||||||||||||||||||||  |||||||||| |||||||| |||||    
T  32520169 agtttgtcaattaaatctttatctttgtatttttgtcacatgacgagacacttaattgaaaaacttttgacaaa 32520096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 20832519 - 20832595
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 109  Q
    |||||||||||| ||| ||||||| | ||| |||| |||| |||||||||||| ||||||| ||||| || ||||||    
T  20832519 aaagtttctcaattaggtctttgtgtttatgttttggtcatatgacgagtgacctaattgataaactattgacaaaa 20832595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 3889973 - 3890048
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 108  Q
    |||||||||||| ||| || ||||||  || |||||||||||  ||||| ||| |||||||||||||||| |||||    
T  3889973 aaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaa 3890048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 16710491 - 16710444
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgactt 156  Q
    |||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  16710491 actattttaaaatattaatagagtcaaagtctaatttgaaagtgactt 16710444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 21969251 - 21969352
Alignment:
Q  70 tcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 162  Q
    ||||||||| ||  |||||||||||| |||||| ||||||       |||||||||||||||||| || |||  ||||||||||||| | ||||||||||    
T  21969251 tcacatgacaagaaacttaattgagagacttttgacaaaaataaaagctattttaaaatattaattgagtcagagactaatttgagattcacttacaaag 21969350  T
Q  163 at 164  Q
    ||    
T  21969351 at 21969352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 32520083 - 32519993
Alignment:
Q  13 gactattttgaaatattatcaaag-tttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 102  Q
    ||||| ||||||||||||| |||  |||| ||| || |||| ||||| ||||||||||| |||||| ||  ||||||||| ||||||||||    
T  32520083 gactactttgaaatattataaaaaatttcacaattaaatctatgtctctatatttttgttacatgatgaaagacttaattaagaaactttt 32519993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 19121912 - 19121856
Alignment:
Q  107 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||| ||||||||||||||||| | |  ||||| |||||||||| ||||||||||    
T  19121912 aaactagtttaaaatattaatagagttagcgactagtttgagagtggcttacaaaga 19121856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 23765853 - 23765921
Alignment:
Q  34 aagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 102  Q
    |||||| |||| ||| || |||||| ||| ||||||||||||||  || ||||||||||||||| ||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacatgataagggacttaattgagaaattttt 23765921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 39643177 - 39643020
Alignment:
Q  14 actattttgaaatattatcaaag-tttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaa----- 107  Q
    ||||||||||||||||||||||  |||||||| || ||||  |||| ||| |||||||||||||||||  ||||||||||| |||||||| | ||         
T  39643177 actattttgaaatattatcaaaaatttctcaattaaatctccgtctctatgtttttgtcacatgacgaaagacttaattgataaacttttgataaagaca 39643078  T
Q  108 --aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
      ||  ||||||||||||||||||| |||   |||||||| ||||| |||||||||||    
T  39643077 agaagcattttaaaatattaatagagtcataaactaattttagagtaacttacaaaga 39643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 8285218 - 8285301
Alignment:
Q  73 catgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgaga 149  Q
    |||||||||||||||||||||||||||||| |||||       |||||||||||||||||||| | ||| ||||||||||||||    
T  8285218 catgacgagtgacttaattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 1862345 - 1862429
Alignment:
Q  64 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaatcaaggactaatttga 147  Q
    ||||| |||||||| ||||||||||||||||||   ||| ||||| ||| |||| ||||||||||||| |||| |||||||||||    
T  1862345 tttttttcacatgatgagtgacttaattgagaagtatttgacaaagactgttttgaaatattaatagagtcaaagactaatttga 1862429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 9900269 - 9900345
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 109  Q
    |||||||||||| ||||||||||| | ||| ||||||||||||| | || || |||||||||||| |||| ||||||    
T  9900269 aaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgagaaatttttgacaaaa 9900345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 36184675 - 36184522
Alignment:
Q  14 actattttgaaatattatcaaag-tttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa---- 108  Q
    |||| |||||||||||||||||| |||||||| ||||| ||| ||| ||| |||| ||   |||||||| ||||||||||||||| |||| ||| |        
T  36184675 actactttgaaatattatcaaaggtttctcaattagatttttatctctatgttttcgttgtatgacgagggacttaattgagaaatttttgacatagata 36184576  T
Q  109 ---actattttaaaatattaatagaatcaaggactaatttgagagtgacttaca 159  Q
       | |||||| ||||||||||| | | |  |||||||||||||||||||||||    
T  36184575 atgattattttgaaatattaataaagttatagactaatttgagagtgacttaca 36184522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 12640184 - 12640288
Alignment:
Q  65 ttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgactta 157  Q
    |||| |||||||||||| ||||||||||| |||||||| |||||       ||||||||  |||||||||||| |||  ||||||||||||| | |||||    
T  12640184 ttttttcacatgacgagggacttaattgaaaaacttttgacaaaatcaaagactatttt-gaatattaatagattcagtgactaatttgagaatcactta 12640282  T
Q  158 caaaga 163  Q
    ||||||    
T  12640283 caaaga 12640288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 20399029 - 20399084
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    |||| ||| ||||||||||||| ||| |||||||||||||| || |||||||||||    
T  20399029 actaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagat 20399084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 8839931 - 8840083
Alignment:
Q  5 aagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttta 103  Q
    ||||||| ||||||||||||||||| || |||||||||||| || |||  ||  | ||| ||||| |||||||| ||| || || ||||| ||||||||     
T  8839931 aagacagggactattttgaaatattgtcaaaagtttctcaattaaatccatgattctatgtttttttcacatgaggagagatttgattgaaaaacttttg 8840030  T
Q  104 acaaa-------actattttaaaatattaatagaatcaaggactaatttgaga 149  Q
    |||||       |||||||| ||||||||||||| ||  |||||||| |||||    
T  8840031 acaaagacagggactattttgaaatattaatagagtcggggactaatctgaga 8840083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 4902256 - 4902377
Alignment:
Q  33 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 131  Q
    |||||||||||| ||| | | | ||| ||| |||||||||||||| ||  |||  | ||||||||||||| ||||| |||| ||||||||||| ||| ||    
T  4902256 aaagtttctcaattaggtttatatctttatgtttttgtcacatgatgatggaccaatttgagaaacttttgacaaacactactttaaaatattcataaaa 4902355  T
Q  132 tcaa-ggactaatttgagagtg 152  Q
    ||||  |||| |||||||||||    
T  4902356 tcaatagacttatttgagagtg 4902377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 11275809 - 11275865
Alignment:
Q  107 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    |||||| ||||||||||||||| | |||  ||||||||||||| ||| |||||||||    
T  11275809 aaactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaaga 11275865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 6210 - 6295
Alignment:
Q  83 gacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||||||||||||||||       |||||||| ||||||||||||| |||| ||||||||||||| | |||||||||    
T  6210 gacttaattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgagaataacttacaaa 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 6153 - 6064
Alignment:
Q  5 aagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattga 93  Q
    |||||||||||||||||||| |||| || |||||||||||| ||||    ||| | ||| ||||| |||||||||||| |||||||||||    
T  6153 aagacagagactattttgaattattgtcaaaagtttctcaattagactcatgtttctatgtttttttcacatgacgagggacttaattga 6064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 82104 - 82178
Alignment:
Q  7 gacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacga 80  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||| ||||||  || |||||||||||||||||    
T  82104 gacaaagactattttgaaatattgtcaaaagtttctcaattagatcattgtctcaatttttttgtcacatgacga 82178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 82013 - 81970
Alignment:
Q  118 aaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  82013 aaatattaatagagtcaatgactaatttgagagtgtcttacaaa 81970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 4796 - 4850
Alignment:
Q  109 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||||||||||||||||||  ||||||||||||| | | |||||||||    
T  4796 actattttaaaatattaatagaatcagagactaatttgagaataatttacaaaga 4850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 11542 - 11588
Alignment:
Q  117 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11542 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 11907 - 11953
Alignment:
Q  117 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 163  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11907 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 12047 - 11992
Alignment:
Q  106 aaaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 161  Q
    ||||||||||||||||||||||| ||| ||  || ||||||||||| |||||||||    
T  12047 aaaactattttaaaatattaataaaattaaaaacaaatttgagagtaacttacaaa 11992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 12080 - 12186
Alignment:
Q  60 tatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtg 152  Q
    |||||||||||||||||||||  ||||||||||| |   |||| ||||||       ||||||||||||||||||| ||| ||||| ||||||  |||||    
T  12080 tatatttttgtcacatgacgaaagacttaattgaaatttttttgacaaaaatagtgactattttaaaatattaatacaatgaaggattaattt--gagtg 12177  T
Q  153 acttacaaa 161  Q
    |||||||||    
T  12178 acttacaaa 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 13935 - 13899
Alignment:
Q  60 tatatttttgtcacatgacgagtgacttaattgagaa 96  Q
    ||||||||||||||||||| || ||||||||||||||    
T  13935 tatatttttgtcacatgactagggacttaattgagaa 13899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 10931 - 10874
Alignment:
Q  107 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 164  Q
    |||||||||||||||||||||| |||||  |||||||| |||| | ||||| ||||||    
T  10931 aaactattttaaaatattaataaaatcatagactaattagagaatcacttaaaaagat 10874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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